Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00029 ATGGCTTTCCTTCTTCTCTTTCTCCTCTCCCTTCTCGCTTCTTCTGCCACTGCCTGCGATCGCTGCCTGCATCAGTCCAAGGCTTCCTATTTCTCCAAGGCTTCTGTTCTTTCATCTGGGGCATGTGGGTATGGGTCTCAGGCACTGGACTTCGGTGGTGGAAACCTTGCAGCTGGTGTGGCCTCTCTCTTCAAAGACGGAGCCGGTTGTGGTGGCTGCTTTCAGATAAGATGCAAGAACCCAAGTGTTTGCAGCAAACTGGGTACTACGGTGCTGTTGACTGATCTCAATCGCAACAACGAAACTGACTTTGTGCTCAGCAGCAGAGCTTTCTCAGGCATGGCTCAGAAGGGCAAGGGCCAAGAAATATTGAAACTTGGCATTGTTGACATTGAATACAAGAGAGTACCCTGTGTTTACAAAAATCAGAATTTGGCGGTCCGTGTGGAAGAATCAAGCAAGAAGGCAGATTATTTAGCAGTAAAATTTCTGTACCAAGGAGGTCAAACAGAGATTGTGGGCGTTGATGTGGCTCAGGTGGGGTCTGCGAATTGGAGCTTCATGAGCAGAAACCACGGTGCAGTGTGGGACACGAGTAGGGTACCAAAAGGTGCATTGCAGTTTCGTTTTGTGGTCACAGCAGGGTATGATGGGAAGTGGATTTGGGCAAAGAAGGTTCTACCTGCTGATTGGAAAAATGGTGTGATATATGATTCTGGGGTTCAGATAACAGACATTGCACAAGAGGGTTGCTTCCCTTGTGATGATTCCACCTGGTCATGA 783 0.484 MAFLLLFLLSLLASSATACDRCLHQSKASYFSKASVLSSGACGYGSQALDFGGGNLAAGVASLFKDGAGCGGCFQIRCKNPSVCSKLGTTVLLTDLNRNNETDFVLSSRAFSGMAQKGKGQEILKLGIVDIEYKRVPCVYKNQNLAVRVEESSKKADYLAVKFLYQGGQTEIVGVDVAQVGSANWSFMSRNHGAVWDTSRVPKGALQFRFVVTAGYDGKWIWAKKVLPADWKNGVIYDSGVQITDIAQEGCFPCDDSTWS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00029 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Vium2216g00029 260 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Vium2216g00029 260 PRINTS Major pollen allergen Lol pI signature 78 88 IPR005795 GO:0005576|GO:0019953
Vium2216g00029 260 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Vium2216g00029 260 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Vium2216g00029 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Vium2216g00029 260 PANTHER EXPANSIN-B3 9 242 - -
Vium2216g00029 260 FunFam Expansin-like A2 140 244 - -
Vium2216g00029 260 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
Vium2216g00029 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Vium2216g00029 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Vium2216g00029 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Vium2216g00029 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Vium2216g00029 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Vium2216g00029 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Vium2216g00029 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Vium2216g00029 260 Pfam Lytic transglycolase 57 133 IPR009009 -
Vium2216g00029 260 Gene3D - 139 244 IPR036749 -
Vium2216g00029 260 Gene3D - 10 138 IPR036908 -
Vium2216g00029 260 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Vium2216g00029 260 CDD DPBB_EXLA_N 17 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00029 Vium-Chr2216 222006 223692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00029 16 260 Expansin Gene Family AT4G38400 65.992 8.41e-114 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00029 - - gmx:100819849 447.588