Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00028 ATGGCCACCATGGAAGACATGAGCATGAGTGGGGAAATTGCACTTCCTGGCTTCCGATTCCACCCCACAGAGGAAGAGCTTCTGGATTTCTATCTTAAGAACATGGTTGTTGGCAAGAAACTCCGTTACGACGTTATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTACCTGATTTGGCTAAGGTTGGGGAGAGAGAATGGTACTTCTTCGTGCCGAGGGACAAGAAGCATGGAAGCGGAGGAAGGCCAAACCGGACCACCGAGAAAGGGTTTTGGAAAGCAACCGGTTCGGACCGGAAAATAGTGACTCTGTCTGATCCCAAACGCATAATCGGGTTAAGGAAGACCCTGGTTTTCTACATGGGAAGAGCTCCCAGTGGCCGCAAAACCGATTGGGTCATGAATGAGTATCGTTTACCTGACAATTGCAAATTACCCAAGGAAATAGTGTTGTGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGGAAAGAGCAGAGAGAGAGATGAAGCAAATGGTGGGATCCCCTGCTTCTCCTCCTTCATCGACGGACACCATGTCCTTCAGCAGCCCACAGGAAGAGGCAAACGTGCCCTTGCCTCTGCCCTTGTTGCAGCATGTTCTTAAGAAAGAGTCTGAATCTGAAGAAACAATGGCATGTGTAGTGCCTAAACAAGAGAAAACAAGCAGCAGCAACAACAACAACAAAGGCAGTTGTGGGGCATCTTCCCTACAAATGCCCTTTGGGAAGGACAATCTTCCGGACCTGCAGCTTCCCATGTTGACAGATTGGACCCAAGATACCTTCTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTAACTCCTTCCAACATCTTAAACTTTTACTGA 891 0.4781 MATMEDMSMSGEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPDLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYMGRAPSGRKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEERAEREMKQMVGSPASPPSSTDTMSFSSPQEEANVPLPLPLLQHVLKKESESEETMACVVPKQEKTSSSNNNNKGSCGASSLQMPFGKDNLPDLQLPMLTDWTQDTFWAQLNSPWLQNLTPSNILNFY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00028 296 MobiDBLite consensus disorder prediction 176 201 - -
Vium2216g00028 296 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vium2216g00028 296 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Vium2216g00028 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 231 - -
Vium2216g00028 296 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Vium2216g00028 296 MobiDBLite consensus disorder prediction 181 200 - -
Vium2216g00028 296 MobiDBLite consensus disorder prediction 228 252 - -
Vium2216g00028 296 FunFam NAC domain-containing protein 67-like 23 164 - -
Vium2216g00028 296 MobiDBLite consensus disorder prediction 229 248 - -
Vium2216g00028 296 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00028 Vium-Chr2216 205743 207116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00028 9 296 NAC Transcription Factor Family AT2G17040 60.345 1.03e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2216g00028 NAM 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00028 - - gmx:732555 509.605