Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00027 ATGATGAAATTTGAACAATTGATTGGCGTAGACCTTTTCAAATGGCATAAATTTCAATGTGAAAAAGACATNGACTTACCTGATTTGGCTAAGGTTGGGGAGAGAGAATGGTACTTCTTCGTGCCGAGGGACAAGAAGCATGGAAGCGGAGGAAGGCCAAACCGGACCACCGAGAAAGGGTTTTGGAAAGCAACCGGTTCGGACCGGAAAATAGTGACTCTGTCTGATCCCAAACGCATAATCGGGTTAAGGAAGACCCTGGTTTTCTACATGGGAAGAGCTCCCAGTGGCCGCAAAACCGATTGGGTCATGAATGAGTATCGTTTACCTGACAATTGCAAATTACCCAAGGAAATAGTGTTGTGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGGAAAGAGCAGAGAGAGAGATGAAGCAAATGGTGGGATCCCCTGCTTCTCCTCCTTCATCGACGGACACCATGTCCTTCAGCAGCCCACAGGAAGAGGCAAACGTGCCCTTGCCTCTGCCCTTGTTGCAGCATGTTCTTAAGAAAGAGTCTGAATCTGAAGAAACAATGGCATGTGTAGTGCCTAAACAAGAGAAAACAAGCAGCAGCAACAACAACAACAAAGGCAGTTGTGGGGCATCTTCCCTACAAATGCCCTTTGGGAAGGACAATCTTCCGGACCTGCAGCTTCCCATGTTGACAGATTGGACCCAAGATACCTTCTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTAACTCCTTCCAACATCTTAAACTTTTACTGA 792 0.4634 MMKFEQLIGVDLFKWHKFQCEKDXDLPDLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYMGRAPSGRKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEERAEREMKQMVGSPASPPSSTDTMSFSSPQEEANVPLPLPLLQHVLKKESESEETMACVVPKQEKTSSSNNNNKGSCGASSLQMPFGKDNLPDLQLPMLTDWTQDTFWAQLNSPWLQNLTPSNILNFY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00027 263 MobiDBLite consensus disorder prediction 148 167 - -
Vium2216g00027 263 MobiDBLite consensus disorder prediction 196 215 - -
Vium2216g00027 263 Pfam No apical meristem (NAM) protein 22 109 IPR003441 GO:0003677|GO:0006355
Vium2216g00027 263 Gene3D NAC domain 5 131 IPR036093 GO:0003677|GO:0006355
Vium2216g00027 263 SUPERFAMILY NAC domain 24 127 IPR036093 GO:0003677|GO:0006355
Vium2216g00027 263 MobiDBLite consensus disorder prediction 146 168 - -
Vium2216g00027 263 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 198 - -
Vium2216g00027 263 ProSiteProfiles NAC domain profile. 1 127 IPR003441 GO:0003677|GO:0006355
Vium2216g00027 263 MobiDBLite consensus disorder prediction 196 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00027 Vium-Chr2216 202675 203895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00027 25 263 NAC Transcription Factor Family AT2G17040 56.846 2.19e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2216g00027 NAM 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00027 - - vum:124829580 530.791