Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00026 ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGACATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAACCTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCTACCGAGGACGACCAGGCCTTCGATCCCCAGCCTCACGCCGGCGAGTCCACCGGCCTCAAACTTCTTGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGATAAACTCGACTTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTGTCTTCTCCGTTCGGTACCTCGCCGGAGCGCGTCGGGGCTTACTTCGCGCAGGCGCTGCAGGCGCGTGTGGTGAGCTCCTGCCTCGGCTCGTACTCTCCGCTGACCGCGAAATCTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTACAACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGCTATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCGATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCTCGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTCGGAGCTCCTCGACTCTACCGGCCGGAGACTCGCGGATTTCGCGAGCTCGCTTGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTGACCGAACTGAGTCAACTCGGCGTTCGAGCCAACGAGGCGATCGTGGTGCACTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAGGACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACAGCCTCGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGGAACATCGTGGCCGTGGGCGGGCCCAAGAGAACCGGTGAGGTTAAGGTGGAGCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCCGGGGCAACCCTGCTGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGGAGAGGTTATACGCTGGTCGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAAGGACCTTTCTCTGTTGATCGCCTCTGCTTGGCAGCCCTCTGATTTGATTACTTACCCCGATTGA 1314 0.586 MLQSLVPRSPRTSNPNDMKTKRPVDTADSPADQPSFKRTNFSADTATEDDQAFDPQPHAGESTGLKLLGLLLQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00026 437 MobiDBLite consensus disorder prediction 1 20 - -
Vium2216g00026 437 Pfam GRAS domain family 69 428 IPR005202 -
Vium2216g00026 437 ProSiteProfiles GRAS family profile. 58 428 IPR005202 -
Vium2216g00026 437 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 56 423 IPR005202 -
Vium2216g00026 437 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00026 Vium-Chr2216 193007 195294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00026 18 431 GRAS Transcription Factor Family AT5G41920 66.508 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2216g00026 GRAS 5.3e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00026 - - pvu:PHAVU_011G024600g 808.135