Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00020 ATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATATCTTGCTTAGAGAAATGAAATCAGAGGAAAGAGGTTTGTACTTGATCCATTTGCTGCTCACTTGTGCAAATCACGTAGCTGCTGGTAATCTTGAAAATGCAAACGCCACACTCGAGCAGATTTCACTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATAGCTGCGTATTTTATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAGAGTGACTATGCTATCTGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATGTTCTCACAAATCAGGCCATCGTTGAGGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTTCTGAAGCTACGCAGTGGATTGCCCTCCTCCAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACTGGGATTCATCAGAAAAATGAGATTCTGGATCAGGTAGCTCATAGACTAACTGAAGAGGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAATCTAGAAACTCTTGATTTTGACAAACTTCGAGTGAAAACTGGTGAGGCACTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTTTGATGATGAAGCCTTGCGGAGAAAATCTCCTCGTCTGTTAAAAGGCTCAAACGGAATTCACCTGCAAAGAGTCCTGCCACTGAGCCAAACCACATTGGGTGATATGCTTGAGAAAGACATGATCAATGGGTACACTCCAAGCCCTGACTCAACCTCGTCATCACCAGCATCTTTTACCACTTCCAATTCAATGAACACGGAGAGCTTTCTCAATGCCTTATGGGGTTTATCACCAAAGGTCATGGCTGTGACAGAGCAAGACTGTAACCACAATGGTCCAACTCTGATGGATAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGACTGTTTGGAATCAACAGTCTCAAGAACCTCATTGGAGAGATTAAGGGTGGAGAAGATGATTTTCGGGGAGGAAATAAAGAACATCATTGCATGTGAAGGGCCTGATCGAAAGGAGAGACACGAAAAGCTTGAAAAGTGGTTCCAGAGATTTGACCAAGCTGGGTTCGGTAATGTGCCTCTGAGCTACTATGGTATGTTGCAAGCAAGGAGGTTCGTCCAGAGCTATGGCTCTGAAGGATACAGAATGAGAGATGAAAATGGCTGTGTATTAATTTGCTGGCAGGATCGACCAATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1368 0.4371 MMSLSPSLGSPNNILLREMKSEERGLYLIHLLLTCANHVAAGNLENANATLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRVTMLSEEILVQKLFFELFPFLKVAYVLTNQAIVEAMEGEKVIHIIDLNASEATQWIALLQVLSARPEGPPHLRITGIHQKNEILDQVAHRLTEEAEKLDIPFQFNPVVSNLETLDFDKLRVKTGEALAISSILQLHSLLAFDDEALRRKSPRLLKGSNGIHLQRVLPLSQTTLGDMLEKDMINGYTPSPDSTSSSPASFTTSNSMNTESFLNALWGLSPKVMAVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEGPDRKERHEKLEKWFQRFDQAGFGNVPLSYYGMLQARRFVQSYGSEGYRMRDENGCVLICWQDRPMFSISAWRSRK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00020 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 451 IPR005202 -
Vium2216g00020 455 ProSiteProfiles GRAS family profile. 19 452 IPR005202 -
Vium2216g00020 455 Pfam GRAS domain family 28 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00020 Vium-Chr2216 131606 134030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00020 16 455 GRAS Transcription Factor Family AT1G50420 66.517 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2216g00020 GRAS 4.3e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00020 - - gmx:100814131 820.076