Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00016 ATGGAGTTTGTGGGGAAGACAGTTAAGAAAGAGGTGAAGGGGTTTGGGATTATTTCGGGAACAGTGAAATCGTACGACTCTGCGTCTGGTTTTTTGGAGATCGTTTACGAAGATGGTGATTCTGAGGAATTGGAGTCCTCTGACGTGGCTTCTCTCTTGCAATTTCAACCGGAGAGTGTCAAGGCTAAGCCTCGAGTTGGTCGGAAACCTAAGAAGCGTTGCCGGGTCGAGAGGAAGCGCGATGTTGGAGCAGGTTCAGGTAATGTTAGAGAGAATTTGGTGGCGGAGGGTAGTGGTTTTAGGGGGGTTTTGGATGGGGATGTTTCTTCTGGTAGTGGTGGGGGTTTGGATTTGGATAGTGGTGTGTTAGAGAGAAATTTGGATGGTATAGTTGGGAATGGAGGGAATCTTGAGGGAAATGCTAATGGGAGTAAGGAGGAAAATGGGGTTAGAGAAACTCCGATAGAGGAAACTGGCTTAGAAGATAGTTTGAACAAGAGTTTATCCGGAAATGTTAGTTGTGTTAAAGATGGACTTGATTTGAATGCTAATCTGGATGAGGATTTAAATCTAGATGTGAGTAATGAGGATCGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTGAGTAATGAGGATGACGTCAGCAGGGGTGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAATGTGGAGGTAGTATGTGAAGAAGGTAAGGAAACTCGGTGTGATGGTGATGGAAATGGACATTCTTTGGTGGATAATGTTTTGTTTGGTAAGATGGGGCTGTCCCAAAAGGAAGAGATAAATGTTAATAATAGTTTTGTGGAAGGTGACGGCATTAATGGTAATTTCAATCACGCCTTTGATGCGGTTAAATTGGAGGTAATTCATGTTTCTTCTGATCATCCATCTAAAGAAGGTTCTTTGTGTTTTGTTGAGGAAAATGGAGGAGACAGTCGCAAAGAAGATGCAGGGACTATTAATTCTCATCAGATTTCAAGTGCAATTTCTGTTTGGGATTCAGATTTTGGGGAGGCTCAGCGAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATGAATACCAAGATGATCCAGGAAGTCCTTGCAAACAAGAAAAATTCCTAGATGTTTCAGGAAGTCCATGCAAACAAGAAAATAGTAGAAGGAAAAGAAGAAAATTATCAGATAATCCAGGAGCCATGCCAGAGACAGTTTTAAGGAGGAGCTCTCGTCGGGCATCAGCTAGAAAAGGGGTTTCAAGCACCTTAGAAGTGGAAGTGGCTGATGATGCTTTGGTAACCTTGGGAACTGATGTCTTAACAGAAGAAAAACCTCTAATCCTTGTTTCTCAGAAATCTGAGCAATATAACAATGATCTTAGATACAGGCAATGCAACAATCTTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGATGGTGTTCCTGTTCTTGAACTGTTTTCTATTTATGCGTGTTTAAGATCATTCAGTACTTTGTTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTGGATGCACTGAAGTCTGAAATTCCAAGTTTATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGGAAGCAGTTGGAATACATTTCCAATGAGGGTTGCCAATCTGCATCCAATTGTCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCAGAGTACCTTCTGATTCATGACTCAGGATTTAAAACTGGTTTTGATATTAAACATCTAATGTTCAGAACTGATTACTATAGACAACCTGTAATGGTGAAGGTCGAGATTCTCCAATACCTGTGTGATGATATGATTGAATCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTTACGGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACGCATCCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTGGATGACACAACTGACTGGAATAGTGACGAGTGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGACGGTTGCCCTGCTGCATTCCATTCACGATGTGTTGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTGGATGAAATCACGAAGGTCACTTCGAGGAGCAGACCTATTAGGGATGGATATGGATGGTAGTGTCTATTTCAACAGCTGCAGTTACCTGCTAGTGTCAAGCTCATCTGAAGCAGGGCCATTGTTCTATTACTACCACCGAAATGATATACATGTAGTAATTGAAGCTCTAAAATCTATGGGTCCTTTATATAGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAAAGCTAACTTGAATGTAGGGGATAGTGTCTTTAATCAAAATTCCGGCAAGAACATGCAGATGAAGGGAGAATATTCTACTATGTATACATCTTTGGCACCTTCTACATCAGAGATATGTTTGGACAATAATCAGGCCAATGATCAAGGAAAGTTGGATGAAAATTCAACTGTTGACTGTTGTATGCAACTTGGCCAAGAGTTTCCAAAAGTTGGGAACTGCCTAGACTCAACGATCACCATAGAAAGTCCTTGTGTTGCTTCAGATGGATCAGCTGATACCACACAGACGAGAACAGGCACCAACAATGTTCAGACGTGTGGGCTCAATGATTTCAATAGATGTAATGAATCCTTGAATCAGCCAGGAGTACCAGAAAGACACTATCCCGACTGTTCTTTGACATCTTCCAGCTTGGATGTGGGGCATAAAATAAATTTAAGATCTGTAGGTGATAGCAGTACCCCCTCCCCGGACAGTAAGGATAATTCTGAAGGACCTTGTGGAACTGAGTATGTAAACTATTATAGCTTTGCCCGAACAGCTTCATTTGTTGCACAGGAGTTGATGTGTAAGTCGCCTGAGAAAATGAATAAGATTTTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAACCAAGGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCCCGAACTGGATGCAGCTGCTCAAAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGCTAATGAAGACAGGGATTGTTTGTTTAATTCTGTTGTGAAGCCTGTTTGGGAAGTGTCCAATAGCACTTCGGTTGGGCTTCAACCCAGGAATATCCAGAATGGGCATCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGGTTCGGTTACGTGGGCTTTTATTGGGTCCGTGGCTTAATCTGCATCAAACAAATCTTTGGCATAAAGATCTTTTGAAGACATCTGATTTTCTTCGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTCCCACAATGGGGTCCGCTATTCATATTGTGGTTTCACGCACATCTTCCAGGCATGGTATTGCAAAGAAAAGGGCCAGGTATTCAGATAATGAAACCAGTTCATCTTCAAACAGTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTGTCCCGAAAATTGTTTAATTTGAAGGTTTTGCCTCACTCCTTGGTTGCCAAGGCTGCTAGACAAGGTGGGTGTAAGAAGATACCAGGAATTTTATATCTTGAGAATTCAGACTTTGCACGGAGAAGCAGATTTGTTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGCTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAGAACAATCATCCTTTATGTGTGTTGGACAAGGAATCTAGAAAATCGGTCAGGCTGTTCAAAAAATCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATATCTTATTGATTTTGGAAAGAGAAGGGCTATTCCGGATGTTGTTATTAAACATGGCTCTCTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTAGAGGAATCTTATGTTCCAATGCATCTTCTAAAGAATTTTGAGGACAAAAGAATTGTTCGCAAATCCACTGATAAGAAACTTGAAAAAATGCTTGAGATTGGTAAAGTAAACAAGAAAATTCCTCAAGAAAGGGGATTTTCATATCTGTTTACTAGATTGGAAAGATCTGATTGTCATCAATGTGGGCACTGCAACAAAGATGTTTCAATGAGGGATGCTGTGAGGTGCCTCCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCAGGTAGCACATCAAATACTGGAAGCACATATTCATGTAACAGATGTCAGGATGGGTTGCATGCAAAGACTAATACCAATAAAAGAAAAGTTGGCTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTGTGCCTTCAGTTTGTATGTCAGTAAACCTCAAGGGCAACAAGAAGGCATTGAGTAAGGTACGCCAGGGAAGATCTCGAAACAGTAAGAATATCCAATCAAGTGTACCTCTTCGCCGATCTACTAGGAAGGCCAAATCCCTGTATATGCAAAGTCAAATGAACGGTGGACGTAGAAAAGGAAAGCCCGGTAAAAAGAACGTGGGACGTAAAAAGGGAAAGCAAAGTAAATCCAAGAAGGTGACCTCTCCGGAGTCCAATGAACCTACTGGTGAATATACAAAGTTAGCAGTAACTACACGAGGGACGAGAACAAAGTTCTGTAGCAGTTATTGGCTTAATGGTCTTCGGTTGTCTCGAAAGCCAAATGACGAGCGAGTATTGCTATTTAAAGAGAAGAAGACTATTGTCTCCTCTGAAGACTTTTCTGGCTCTCTTGACTGTCTTAACTGCTGCCTTTGTTGTGGAAATGGATACTCCTTGAATTATATTGCGTGTGAAATATGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATGTGGACAATGTCAAACAACTTATTGGATTTAAGTGCCATGTTTGTCTTGATAGAACTGCTCCAATCTGTCCTCATGTGAAAATTAATGCATTTTCTCGTCCTGAAAGCAGTGCTGCAAATGAGTGTGCAGAGGAATTATCTAATCCTGTTTCTCTTCAACCTTTAAGTGAGATCCCATGCAATTAA 5232 0.41 MEFVGKTVKKEVKGFGIISGTVKSYDSASGFLEIVYEDGDSEELESSDVASLLQFQPESVKAKPRVGRKPKKRCRVERKRDVGAGSGNVRENLVAEGSGFRGVLDGDVSSGSGGGLDLDSGVLERNLDGIVGNGGNLEGNANGSKEENGVRETPIEETGLEDSLNKSLSGNVSCVKDGLDLNANLDEDLNLDVSNEDRLKRRDCIDLNLDVSNEDDVSRGEAMQRECNFDLNVEVVCEEGKETRCDGDGNGHSLVDNVLFGKMGLSQKEEINVNNSFVEGDGINGNFNHAFDAVKLEVIHVSSDHPSKEGSLCFVEENGGDSRKEDAGTINSHQISSAISVWDSDFGEAQRVDCPSEGGIAIIHEYQDDPGSPCKQEKFLDVSGSPCKQENSRRKRRKLSDNPGAMPETVLRRSSRRASARKGVSSTLEVEVADDALVTLGTDVLTEEKPLILVSQKSEQYNNDLRYRQCNNLLPKLQLPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVDALKSEIPSLLFDSIHVSILQTLRKQLEYISNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHDSGFKTGFDIKHLMFRTDYYRQPVMVKVEILQYLCDDMIESEAIRSELNRRSLVTETDMGFDQNMYFDASKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRAWMKSRRSLRGADLLGMDMDGSVYFNSCSYLLVSSSSEAGPLFYYYHRNDIHVVIEALKSMGPLYRGILMAIYKHWDIKANLNVGDSVFNQNSGKNMQMKGEYSTMYTSLAPSTSEICLDNNQANDQGKLDENSTVDCCMQLGQEFPKVGNCLDSTITIESPCVASDGSADTTQTRTGTNNVQTCGLNDFNRCNESLNQPGVPERHYPDCSLTSSSLDVGHKINLRSVGDSSTPSPDSKDNSEGPCGTEYVNYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEFISDQTKVIMKKSTNFCWPSIPELDAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEVSNSTSVGLQPRNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLRVKRLLLLLESNLRPFALSADWLKHVDSVPTMGSAIHIVVSRTSSRHGIAKKRARYSDNETSSSSNSASGLGMYWWRGGRLSRKLFNLKVLPHSLVAKAARQGGCKKIPGILYLENSDFARRSRFVAWRAAVEMSTSAEQLALQARELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCTEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEDKRIVRKSTDKKLEKMLEIGKVNKKIPQERGFSYLFTRLERSDCHQCGHCNKDVSMRDAVRCLHCKGYFHKRHVRKSGSTSNTGSTYSCNRCQDGLHAKTNTNKRKVGSKLQKIQAKKRKTVPSVCMSVNLKGNKKALSKVRQGRSRNSKNIQSSVPLRRSTRKAKSLYMQSQMNGGRRKGKPGKKNVGRKKGKQSKSKKVTSPESNEPTGEYTKLAVTTRGTRTKFCSSYWLNGLRLSRKPNDERVLLFKEKKTIVSSEDFSGSLDCLNCCLCCGNGYSLNYIACEICGDWFHGDAFGLNVDNVKQLIGFKCHVCLDRTAPICPHVKINAFSRPESSAANECAEELSNPVSLQPLSEIPCN 1743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 1581 1597 - -
Vium2216g00016 1743 CDD PHD_SF 1428 1473 - -
Vium2216g00016 1743 SUPERFAMILY FYVE/PHD zinc finger 1422 1483 IPR011011 -
Vium2216g00016 1743 SUPERFAMILY FYVE/PHD zinc finger 671 730 IPR011011 -
Vium2216g00016 1743 PANTHER PHD FINGER FAMILY PROTEIN 2 1703 - -
Vium2216g00016 1743 Pfam DDT domain 494 546 IPR018501 -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 1481 1597 - -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 1525 1555 - -
Vium2216g00016 1743 SMART PHD_3 1427 1474 IPR001965 -
Vium2216g00016 1743 SMART PHD_3 687 730 IPR001965 -
Vium2216g00016 1743 SMART PHD_3 1652 1698 IPR001965 -
Vium2216g00016 1743 CDD PHD1_AIRE 687 729 - -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 960 977 - -
Vium2216g00016 1743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 749 IPR013083 -
Vium2216g00016 1743 ProSiteProfiles Zinc finger PHD-type profile. 685 732 IPR019787 -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 1560 1578 - -
Vium2216g00016 1743 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 604 636 IPR028942 -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 388 402 - -
Vium2216g00016 1743 Pfam PHD-finger 688 729 IPR019787 -
Vium2216g00016 1743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1645 1704 IPR013083 -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 378 422 - -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 960 979 - -
Vium2216g00016 1743 SMART testlast3 490 550 IPR018501 -
Vium2216g00016 1743 ProSitePatterns Zinc finger PHD-type signature. 688 729 IPR019786 -
Vium2216g00016 1743 ProSiteProfiles DDT domain profile. 490 550 IPR018501 -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 1484 1498 - -
Vium2216g00016 1743 SUPERFAMILY FYVE/PHD zinc finger 1639 1700 IPR011011 -
Vium2216g00016 1743 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00016 Vium-Chr2216 94162 107803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00016 1 1709 PHD Transcription Factor Family AT5G12400 39.523 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium2216g00016 DDT 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00016 - - vun:114169688 3144.37