Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2213g00008 ATGGAGGCTCTCAATGCTGCAGCTTTGACCCCTCTGTCTGTGCTTTCTGATACAAAGACAACTAGAAAACAACCTCCAGTTTCTTCATGCAAAGGTTCAAGCTTTTCCACCTTTACCGACAAGAAACCAACGTTGCTGCAAAGTTGCTTATCAAAAAGTCTTCATGGAGGATTGTTTCTTGCAGCTTCAATTATGAGTGGTGATGTTGCCTCAGCTTTGACGTACGAGGAGGCACTGGGGCAAACTTTGAGTCTCCCCGGTACTGGAGACTTCGATGTGAACGGTTTTGTGGAGAGTGCTACTGGCTTTGCAACTGAGAACCCTGTAATTGTTGCTGGGGGAGTGGCCATTCTGGCACTGCCATTGGTTTTGTCTCAGGTTTTTAAGAAGCCTAAGGCGTGGGGTGTTGAGTCTGCTAAGAATGCATATGCAAAACTTGGGGCTGATGAGAATGCTCAGTTGCTTGATATCAGAGCTCTAGTGGAGATTAGGCAAGTGGGGTTCCCAGATGTTGGGGGTCTGAGGAAGAAGGCAGTGTCGATTGCTTATAAGGGTGATGATAAGCCAGGGTTCCTTAAGAAGCTTGCATTGAAGTTTAAGGAACCACAGAATACCACATTGTTTATTCTGGACAAATTTGATGGGAACTCTGAACTGGTTGCAGAGTTGGTTACTGTTAATGGATTTAAAGCTGCTTATGCAATTAAGGATGGTGCAGAAGGACCGAGAGGATGGAAGAGTAGTGGTCTTCCTTGGTTAGCACCAAAGAAGACATTGAGTTTGGATAATCTCACGGATGCTATAGCTGAAGTAATTGGAGATTCATCTGATGGTGTTGCAGTTACTCTTGGGATTGCTGCAGCAGCTGCTGGACTGAGCCTGTTAGCTTTTTCTGAGATAGAATCAATTCTCCAAGTTGTAGGATCAGCTGCACTTGTTCAATTTGCAAGCAAGAAGCTTTTATTTGCTGAGGACCGAAAGCAAACCGTGAAACAACTTGATGAGTTCTTGAACACCAAAGTTGCCCCTAAAGAACTTGTTGATGAAATAAAGGACATTGGAAAGGCTCTTCTGCCAGCCTCTAACAGTAAGGCTCTTCCTGCTCCAGCAGACAAAAGTTCAGAGCTTGCTACAGCTGACAGCACTGCACAGACAGCAGTAGCTACTCCAGTGACCAATGATGCAGTAGCTCCTGCAGTAAACTCAGTGCCCAAAGCTGAAATCAAGGAAGAATCACTTCCTGTGCCACCAAGGCCACTTTCACCATACCCATATTATCCAGATTTCAAGCCTCCAACATCTCCTACCCCATCACAGCCCTAG 1323 0.455 MEALNAAALTPLSVLSDTKTTRKQPPVSSCKGSSFSTFTDKKPTLLQSCLSKSLHGGLFLAASIMSGDVASALTYEEALGQTLSLPGTGDFDVNGFVESATGFATENPVIVAGGVAILALPLVLSQVFKKPKAWGVESAKNAYAKLGADENAQLLDIRALVEIRQVGFPDVGGLRKKAVSIAYKGDDKPGFLKKLALKFKEPQNTTLFILDKFDGNSELVAELVTVNGFKAAYAIKDGAEGPRGWKSSGLPWLAPKKTLSLDNLTDAIAEVIGDSSDGVAVTLGIAAAAAGLSLLAFSEIESILQVVGSAALVQFASKKLLFAEDRKQTVKQLDEFLNTKVAPKELVDEIKDIGKALLPASNSKALPAPADKSSELATADSTAQTAVATPVTNDAVAPAVNSVPKAEIKEESLPVPPRPLSPYPYYPDFKPPTSPTPSQP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2213g00008 440 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 136 253 IPR036873 -
Vium2213g00008 440 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC 1 440 IPR044240 -
Vium2213g00008 440 MobiDBLite consensus disorder prediction 402 440 - -
Vium2213g00008 440 FunFam Rhodanese-like domain-containing protein 4, chloroplastic 132 263 - -
Vium2213g00008 440 Gene3D - 133 263 IPR036873 -
Vium2213g00008 440 MobiDBLite consensus disorder prediction 415 440 - -
Vium2213g00008 440 ProSiteProfiles Rhodanese domain profile. 148 254 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2213g00008 Vium-Chr2213 68240 73026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2213g00008 1 430 Sulfurtransferasese or Rhodanese AT4G01050 55.319 8.32e-149 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2213g00008 K17525 - gmx:100810796 722.62