Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2211g00002 ATGCAATTTTATGTTTTAGGATTCATCAGCATAGATTGCGGAGCTGATCCAGGTTTGAGCTATACCGATCCAGTATTTGGTATAAATTATGTTTCGGATGCAAAGTTAATAAATACTGGTGTGATTGGGAATATATCATCTGAAGCGATCATCGACACATACAATCAACGGCAACTCCGGAGGCTTCGAAGCTTCCCAGAAGGAAAAAGGAACTGCTACAAAATAAATGTCACAGGAGGCTCTAAGTATCTCATCCGCACTGTTTTTCTGTATGGAAATTATGATGGCCGAAATATGTTACCACAGTTTGATCTTCTTCTCGGACCTAACCACTGGGATACAGTGTTTATATACAATGCATTCATTTACCAATCCAATGAGATCATACATGTACCTTTACTAGATTTCGTACAAATCTGTCTTGTTAACACAGGCTATGGTACACCATTTATAACAGCCATAGAATTCAGGACTTTGAAAAATGATACATACGTCACTCAATTCGGATCGTTGGAACTTTACAAGTGGATGCGCTGCGATTTGGGTTCAAGAAAAGCCTACAGGTACTCGAATGATGTTTATGATCGTTTCTGGTATGCCTTAAACTTCGGAGAAAATTGGAATTCACTAAATGCTTCGATTCCTTACTCTTTAAATCAGAGCGATTACCAACCGGGACCTATTATCATGAGCACCGCAGTTACACCAGCAGATGATAGTGATCCGTTGGTAATAAGATGGGGGCCACAAGATGAAAGTGACCGATTCTATGTGTACATGCACTTCATGGAGATTCAAGTGTTAGCCAGGAATCAGACAAGACAATTCAACATCACGAGGAACGGTGAATTAATGGTTCCAAATTTTTCTCCTCGATACCTAGCCGTCGACACTTTATATACCTCGTCAGCCATCAGTGGTAAAGAAATTGAATATTCACTGGAGAGGACCGAAAATTCAACCCTGCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTAATAGATTTACAGAAACCAGAAACATTCCAAGGAGATGTTGAAGCGATTACAAGAATCAAGTCAGTTTATGGAGTGAAAAGGGACTGGGAAGGTGATCCATGCTCCCCTGTAGACTACTTGTGGGATGGTCTCAACTGCACTTATGACAATGAGTTCCCAAGAATCAAAGCTTTGAATTTATCTTCGAGTGGATTGTCAGGAAAGATTGACCCTTCAATCTCAAACCTCACCATGTTGGAGAAGCTGGATTTATCTAACAATAACTTATATGGTGAAGTTCCTGATTTTCTGTCTCATTTACAACACTTGAAGATATTAAACTTGGAGAAGAATGACCTCTCCGGTTCAATTCCCTCTGCACTTGTTGAAAAATCACGCAAAGGTTCTCTCTCACTAAGTGTGGATCAAAAACCATATCCATGTGAATCTGCTCAATGCAACAAGAAGAGAAAGAAAAACACTGTTACACCCACAGTAGCCTCGACCAGTGGGGTTTTATTTCTTCTAATAGCCGTTGGAACATTGTGGATCCTTAAAAGGAAAAAATCAAAAGAAAAATTTACATATCCAGTGGCAGTAAATCATCTGAGTGGGATTTCACAGAAATCCACGGAAAAGGATAATTCGTTCCAGCAACGCAAAAGTCAAATGTATTCATACAATGATGTCCTTCAAATCACTAACAATTTCAATAGAATTATTGGTAAGGGAGGATTTGGAACAGTTTACCTGGGCTTTATCGATGAGACTCCAGTTGCAGTGAAAATGCTTTCCCCATCAGCAGTTCATGGTTATCAACAATTTCAAGCAGAGATTAAACTTCTAATCAGAGTTCATCACAAAAATTTGATATCCCTTATTGGTTACTGTAACGAAGGATCCAATAAGGGCCTTATATATGAATACATGGCTAAAGGGAACTTACGAGAACATCTCTCAGGTAAACACAACGAATCACCATTCTTGAGCTGGAAGGACAGACTTCGTGTAGCAGTGGATGCAGCCGTAGGATTGGAATATCTGCATAATGGTTGCATGACTCCTATAATCCACAGAGATGTAAAGTCTTCAAACATCTTGTTGAATGAACTCTTCCAAGCAAAGTTATCTGATTTTGGTCTATCCAAAGTTGTCCCAGATGATGGAAGATCTCATGTGTCAACTATTGTTGCTGGTACACTTGGTTATCTGGACCCTCACTACCATTCTTCTAATAGATTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACAAATCAACCAGTAATGGCCGGGAATGAAGAAACGGGTCACATAAGTGAACGAGTTAACTTGATGGTATCAAAAGGGGATATCAGGGCCATAGTTGACTCAAGCTTAGAAGGAAATTTTGACATAAACTCAGCATGGAAAGCCGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCCAACGAAAGGCCAATGATGAGTGTGGTAGTGATTGAACTACAGGAGGCTTTAGCGACCGAATTAGCTAGAACAGGTGGTGCTGATCCCAAGTATTCAGTTGCACCGGTCAGCGAGAATGTTGACAGCGAATTCATGCCGTCGGCTAGGTAA 2604 0.3994 MQFYVLGFISIDCGADPGLSYTDPVFGINYVSDAKLINTGVIGNISSEAIIDTYNQRQLRRLRSFPEGKRNCYKINVTGGSKYLIRTVFLYGNYDGRNMLPQFDLLLGPNHWDTVFIYNAFIYQSNEIIHVPLLDFVQICLVNTGYGTPFITAIEFRTLKNDTYVTQFGSLELYKWMRCDLGSRKAYRYSNDVYDRFWYALNFGENWNSLNASIPYSLNQSDYQPGPIIMSTAVTPADDSDPLVIRWGPQDESDRFYVYMHFMEIQVLARNQTRQFNITRNGELMVPNFSPRYLAVDTLYTSSAISGKEIEYSLERTENSTLPPIISAIEIYRVIDLQKPETFQGDVEAITRIKSVYGVKRDWEGDPCSPVDYLWDGLNCTYDNEFPRIKALNLSSSGLSGKIDPSISNLTMLEKLDLSNNNLYGEVPDFLSHLQHLKILNLEKNDLSGSIPSALVEKSRKGSLSLSVDQKPYPCESAQCNKKRKKNTVTPTVASTSGVLFLLIAVGTLWILKRKKSKEKFTYPVAVNHLSGISQKSTEKDNSFQQRKSQMYSYNDVLQITNNFNRIIGKGGFGTVYLGFIDETPVAVKMLSPSAVHGYQQFQAEIKLLIRVHHKNLISLIGYCNEGSNKGLIYEYMAKGNLREHLSGKHNESPFLSWKDRLRVAVDAAVGLEYLHNGCMTPIIHRDVKSSNILLNELFQAKLSDFGLSKVVPDDGRSHVSTIVAGTLGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQPVMAGNEETGHISERVNLMVSKGDIRAIVDSSLEGNFDINSAWKAVEIAMACVSPNPNERPMMSVVVIELQEALATELARTGGADPKYSVAPVSENVDSEFMPSAR 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2211g00002 867 FunFam Leucine-rich repeat receptor-like kinase 345 472 - -
Vium2211g00002 867 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 637 843 - -
Vium2211g00002 867 SUPERFAMILY Protein kinase-like (PK-like) 543 829 IPR011009 -
Vium2211g00002 867 Gene3D Transferase(Phosphotransferase) domain 1 637 845 - -
Vium2211g00002 867 Gene3D Ribonuclease Inhibitor 348 466 IPR032675 -
Vium2211g00002 867 Gene3D Phosphorylase Kinase; domain 1 533 636 - -
Vium2211g00002 867 Pfam Protein tyrosine and serine/threonine kinase 564 829 IPR001245 GO:0004672|GO:0006468
Vium2211g00002 867 CDD STKc_IRAK 568 833 - -
Vium2211g00002 867 FunFam Leucine-rich repeat receptor-like protein kinase 538 636 - -
Vium2211g00002 867 ProSiteProfiles Protein kinase domain profile. 562 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2211g00002 867 Pfam Malectin-like domain 11 334 IPR024788 -
Vium2211g00002 867 SUPERFAMILY L domain-like 371 458 - -
Vium2211g00002 867 ProSitePatterns Protein kinases ATP-binding region signature. 568 589 IPR017441 GO:0005524
Vium2211g00002 867 PANTHER OS07G0107800 PROTEIN-RELATED 9 835 - -
Vium2211g00002 867 SMART serkin_6 562 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2211g00002 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2211g00002 Vium-Chr2211 11724 15619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2211g00002 7 867 Receptor kinase-like Gene Family AT2G19210 48.516 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium2211g00002 Malectin_like 2e-103 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2211g00002 - - vum:124829517 1305.81