Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2211g00001 ATGTGGATGGTTTTGTACATTGCTTTTTTAACTGTTCTACTTATCCAAGCTCATGCTCAACCAGGATTCATCAGCATAGATTGCGGAGCTGATCCAGGTTTGAGCTATACCGATCCAGTATTTGGTATAAATTATGTTTCGGATGCAAAGTTAATAAATACTGGTGTGATTGGGAATATATCATCTGAAGCGATCATCGACACATACAATCAACGGCAACTCCGGAGGCTTCGAAGCTTCCCAGAAGGAAAAAGGAACTGCTACAAAATAAATGTCACAGGAGGCTCTAAGTATCTCATCCGCACTGTTTTTCTGTATGGAAATTATGATGGCCGAAATATGTTACCACAGTTTGATCTTCTTCTCGGACCTAACCACTGGGATACAGTGTTTATATACAATGCATTCATTTACCAATCCAATGAGATCATACATGTACCTTTACTAGATTTCGTACAAATCTGTCTTGTTAACACAGGCTATGGTACACCATTTATAACAGCCATAGAATTCAGGACTTTGAAAAATGATACATACGTCACTCAATTCGGATCGTTGGAACTTTACAAGTGGATGCGCTGCGATTTGGGTTCAAGAAAAGCCTACAGGTACTCGAATGATGTTTATGATCGTTTCTGGTATGCCTTAAACTTCGGAGAAAATTGGAATTCACTAAATGCTTCGATTCCTTACTCTTTAAATCAGAGCGATTACCAACCGGGACCTATTATCATGAGCACCGCAGTTACACCAGCAGATGATAGTGATCCGTTGGTAATAAGATGGGGGCCACAAGATGAAAGTGACCGATTCTATGTGTACATGCACTTCATGGAGATTCAAGTGTTAGCCAGGAATCAGACAAGACAATTCAACATCACGAGGAACGGTGAATTAATGGTTCCAAATTTTTCTCCTCGATACCTAGCCGTCGACACTTTATATACCTCGTCAGCCATCAGTGGTAAAGAAATTGAATATTCACTGGAGAGGACCGAAAATTCAACCCTGCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTAATAGATTTACAGAAACCAGAAACATTCCAAGGAGATGTTGAAGCGATTACAAGAATCAAGTCAGTTTATGGAGTGAAAAGGGACTGGGAAGGTGATCCATGCTCCCCTGTAGACTACTTGTGGGATGGTCTCAACTGCACTTATGACAATGAGTTCCCAAGAATCAAAGCTTTGAATTTATCTTCGAGTGGATTGTCAGGAAAGATTGACCCTTCAATCTCAAACCTCACCATGTTGGAGAAGCTGGATTTATCTAACAATAACTTATATGGTGAAGTTCCTGATTTTCTGTCTCATTTACAACACTTGAAGATATTAAACTTGGAGAAGAATGACCTCTCCGGTTCAATTCCCTCTGCACTTGTTGAAAAATCACGCAAAGGTTCTCTCTCACTAAGTGTGGATCAAAAACCATATCCATGTGAATCTGCTCAATGCAACAAGAAGAGAAAGAAAAACACTGTTACACCCACAGTAGCCTCGACCAGTGGGGTTTTATTTCTTCTAATAGCCGTTGGAACATTGTGGATCCTTAAAAGGAAAAAATCAAAAGAAAAATTTACATATCCAGTGGCAGTAAATCATCTGAGTGGGATTTCACAGAAATCCACGGAAAAGGATAATTCGTTCCAGCAACGCAAAAGTCAAATGTATTCATACAATGATGTCCTTCAAATCACTAACAATTTCAATAGAATTATTGGTAAGGGAGGATTTGGAACAGTTTACCTGGGCTTTATCGATGAGACTCCAGTTGCAGTGAAAATGCTTTCCCCATCAGCAGTTCATGGTTATCAACAATTTCAAGCAGAGATTAAACTTCTAATCAGAGTTCATCACAAAAATTTGATATCCCTTATTGGTTACTGTAACGAAGGATCCAATAAGGGCCTTATATATGAATACATGGCTAAAGGGAACTTACGAGAACATCTCTCAGGTTTGCTTTAG 1998 0.3934 MWMVLYIAFLTVLLIQAHAQPGFISIDCGADPGLSYTDPVFGINYVSDAKLINTGVIGNISSEAIIDTYNQRQLRRLRSFPEGKRNCYKINVTGGSKYLIRTVFLYGNYDGRNMLPQFDLLLGPNHWDTVFIYNAFIYQSNEIIHVPLLDFVQICLVNTGYGTPFITAIEFRTLKNDTYVTQFGSLELYKWMRCDLGSRKAYRYSNDVYDRFWYALNFGENWNSLNASIPYSLNQSDYQPGPIIMSTAVTPADDSDPLVIRWGPQDESDRFYVYMHFMEIQVLARNQTRQFNITRNGELMVPNFSPRYLAVDTLYTSSAISGKEIEYSLERTENSTLPPIISAIEIYRVIDLQKPETFQGDVEAITRIKSVYGVKRDWEGDPCSPVDYLWDGLNCTYDNEFPRIKALNLSSSGLSGKIDPSISNLTMLEKLDLSNNNLYGEVPDFLSHLQHLKILNLEKNDLSGSIPSALVEKSRKGSLSLSVDQKPYPCESAQCNKKRKKNTVTPTVASTSGVLFLLIAVGTLWILKRKKSKEKFTYPVAVNHLSGISQKSTEKDNSFQQRKSQMYSYNDVLQITNNFNRIIGKGGFGTVYLGFIDETPVAVKMLSPSAVHGYQQFQAEIKLLIRVHHKNLISLIGYCNEGSNKGLIYEYMAKGNLREHLSGLL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2211g00001 665 Gene3D Phosphorylase Kinase; domain 1 548 651 - -
Vium2211g00001 665 Pfam Protein tyrosine and serine/threonine kinase 579 661 IPR001245 GO:0004672|GO:0006468
Vium2211g00001 665 PANTHER OS07G0107800 PROTEIN-RELATED 24 659 - -
Vium2211g00001 665 ProSiteProfiles Protein kinase domain profile. 577 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2211g00001 665 Gene3D Ribonuclease Inhibitor 363 481 IPR032675 -
Vium2211g00001 665 ProSitePatterns Protein kinases ATP-binding region signature. 583 604 IPR017441 GO:0005524
Vium2211g00001 665 FunFam Leucine-rich repeat receptor-like kinase 360 487 - -
Vium2211g00001 665 Pfam Malectin-like domain 26 349 IPR024788 -
Vium2211g00001 665 SUPERFAMILY L domain-like 386 473 - -
Vium2211g00001 665 FunFam Leucine-rich repeat receptor-like protein kinase 552 651 - -
Vium2211g00001 665 SUPERFAMILY Protein kinase-like (PK-like) 558 662 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2211g00001 Vium-Chr2211 6345 11409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2211g00001 3 663 Receptor kinase-like Gene Family AT2G19210 46.291 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium2211g00001 Malectin_like 1.1e-103 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2211g00001 - - vum:124829517 1350.5