Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium220g00018 CTCAAAGTGGCGTTCTACGCCTCCACGTGTCCATCTGCGGAGGAAATAGTGAGAAGTACTGTAAACAAAGCCATTTCAGAAAACTCAGGCATAGCAGCTGGTCTCATAAGGATGCATTTCCACGACTGCTTTGTCAGGGGCTGCGATGCTTCCGTGTTGCTAGCATCTACCCAGGGTAACCCAGCAGAAAGAGACCATTTTGCCAACAACCCAAGCTTGCGTGGGTTCGAGGTCATTGAGGACGCCAAGGCCCAGTTGGAGGCTGCATGTCCTCAGACGGTGTCGTGCGCAGACATATTGGCCTTGGCAGCAAGAGACAGTGCTCTTAAAGTGGGTGGCATAAACTACGACGTTCCAACAGGACGCAGAGACGGTCTTGTCTCCGTGGCCGATGAAGCGGCGGAGAATCTGCCTGCACCAACCCTGAGCGCCGATGAGCTTGTGAGTAGGTTTTCACGAAAGGGTTTGTCTGCAGATGAAATGGTGACACTTTCGGGAGCCCATTCCATTGGTGTGTCGCATTGTTCTTCCTTCTCTAAGCGGTTGTACTCTTTCAATCAGACCTTGCCGCAAGACCCATCGATGGACTCTTCCTACGCTGAAACCTTGAAAACAAAGTGTCCTGCGCCACCTTCCATCTCAGACCCGACCGTGTCTTTTGATCCTTCCACTCCCATTCGTTTGGACACCAAATACTACGATGGATTGATCGACCACCGAGGCTTGCTCACATCGGATCAGACGCTGTTCACCTCTCAATCCACCAGGGAAATGGTTCTCGGCAATGCCAACGATCCTGCGAATTGGTCTCAGAAGTTTGCCAAGGCAATGGTTCAAATGGGTTCCATAGATGTCCTCACTGGCTCCAACGGCGAGATCAGGAAGCATTGCACCTTTGTTAATTAA 906 0.5143 LKVAFYASTCPSAEEIVRSTVNKAISENSGIAAGLIRMHFHDCFVRGCDASVLLASTQGNPAERDHFANNPSLRGFEVIEDAKAQLEAACPQTVSCADILALAARDSALKVGGINYDVPTGRRDGLVSVADEAAENLPAPTLSADELVSRFSRKGLSADEMVTLSGAHSIGVSHCSSFSKRLYSFNQTLPQDPSMDSSYAETLKTKCPAPPSISDPTVSFDPSTPIRLDTKYYDGLIDHRGLLTSDQTLFTSQSTREMVLGNANDPANWSQKFAKAMVQMGSIDVLTGSNGEIRKHCTFVN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium220g00018 301 PRINTS Plant peroxidase signature 34 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 74 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 159 171 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 112 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 235 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 10 29 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 275 288 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 93 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Plant peroxidase signature 219 234 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 ProSiteProfiles Plant heme peroxidase family profile. 1 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Haem peroxidase superfamily signature 221 236 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Haem peroxidase superfamily signature 112 124 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Haem peroxidase superfamily signature 160 175 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Haem peroxidase superfamily signature 32 46 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 PRINTS Haem peroxidase superfamily signature 94 111 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 FunFam Peroxidase 138 280 - -
Vium220g00018 301 Gene3D Peroxidase, domain 2 138 280 - -
Vium220g00018 301 PANTHER PEROXIDASE 25-RELATED 3 289 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 ProSitePatterns Peroxidases active site signature. 32 43 IPR019794 GO:0004601
Vium220g00018 301 Gene3D - 4 301 - -
Vium220g00018 301 ProSitePatterns Peroxidases proximal heme-ligand signature. 160 170 IPR019793 -
Vium220g00018 301 Pfam Peroxidase 17 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium220g00018 301 FunFam Peroxidase 4 146 - -
Vium220g00018 301 CDD secretory_peroxidase 1 300 IPR033905 GO:0004601|GO:0042744
Vium220g00018 301 SUPERFAMILY Heme-dependent peroxidases 1 301 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium220g00018 Vium-Chr220 107047 108050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium220g00018 1 301 Peroxidase AT1G05260 48.544 1.14e-91 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium220g00018 K00430 - gmx:100815350 511.916