Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2209g00006 ATGTCTCACCATTACCCAAAACCCCTTCTAGACACTCTATTCTGCTTAGAGGACAACATTCATTTGGAGGAAGAAAAACAAAGAGAAGAAGATGATTACATCGGCAAAACCTCAAAACCAAACTTCTCCGATGTGGTCCTTTCAGAACAAGACCTCTTCTGGGACACCCAGGAGCTCTCTTCTCTTCTCGCCAAAGAAAGCCTTAACAACCTTTCCATCTCTCTCCCGAACAACCCTTCTCTGGCTTCTTCTCGCGGAGAAGCCGTGGACTGGATTCTCAAACTGAATCTTCACCATTCCTTTTCTACCCTCACAGCGCTTCTCGCAGTTAACTACCTCGACAGGTTCCTCTTCACCCTCAGATTCCAGAACGACAAGCCGTGGCTCACGCAACTCGTTGCAGTGGCGTGCCTCTCTCTTGCAGCCAAAGTTGAAGAGACCCACGTGCCCCTTTTCGTGGACCTCCAAGTGGGGGAGAGTAAGAAGTACCTTTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACACTCGGATGGAAGATGAACCCGGTAACACCTCTCTCGTTCCTTGATTACATCACGAGAAAACTCGGCTTAAAGGGTCATCTCTGCTTGGAGTTTCTCAGAAGATGTGAAACCGTTCTTCTCTCTGTCTTTGCAGACTCGAGATTTATGAGTTTTCTTCCTTCTGTATTGGCAACTGCGACGGCGTTGCGCGTGGTGAGTGTTGTGGAGCCTGGTTTGGGAGAGGAATACCAAGATCAGCTCTTGGGTATTCTCGGAATCGACAAGGAGAAGGTGAAAGAATGCTATAAGGTGATGATGGAGATTGTGTCAGGGAAGAGTGAAGAGGGTAAAAGAGGGAATTTGAAGAAAAGGAAGTTTGAGTGCATTCAGTGTAGCCGAAACGACGTGATGGAAGGGTCGTTTAGCTGTGATAGTTCGTGTGATTCTTGGGAGTTAGGTGCGTCATTGAAGAAAAGTAGGAGCCAAGATCAGCTTCTATTGAAGCATTCAAACTCAGATTTTCTCACCATTCCTCGCTAG 1059 0.4693 MSHHYPKPLLDTLFCLEDNIHLEEEKQREEDDYIGKTSKPNFSDVVLSEQDLFWDTQELSSLLAKESLNNLSISLPNNPSLASSRGEAVDWILKLNLHHSFSTLTALLAVNYLDRFLFTLRFQNDKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGESKKYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGHLCLEFLRRCETVLLSVFADSRFMSFLPSVLATATALRVVSVVEPGLGEEYQDQLLGILGIDKEKVKECYKVMMEIVSGKSEEGKRGNLKKRKFECIQCSRNDVMEGSFSCDSSCDSWELGASLKKSRSQDQLLLKHSNSDFLTIPR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2209g00006 352 SUPERFAMILY Cyclin-like 60 186 IPR036915 -
Vium2209g00006 352 Pfam Cyclin, N-terminal domain 77 186 IPR006671 -
Vium2209g00006 352 Gene3D - 82 186 - -
Vium2209g00006 352 CDD CYCLIN_AtCycD-like_rpt1 85 183 - -
Vium2209g00006 352 CDD CYCLIN_AtCycD-like_rpt2 188 278 - -
Vium2209g00006 352 PANTHER CYCLINS 31 285 IPR039361 -
Vium2209g00006 352 SMART Cyclin_C_2 188 308 IPR004367 -
Vium2209g00006 352 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Vium2209g00006 352 SMART cyclin_7 90 179 IPR013763 -
Vium2209g00006 352 Gene3D - 187 276 - -
Vium2209g00006 352 SUPERFAMILY Cyclin-like 189 287 IPR036915 -
Vium2209g00006 352 Pfam Cyclin, C-terminal domain 188 288 IPR004367 -
Vium2209g00006 352 FunFam CYCLIN D32 187 276 - -
Vium2209g00006 352 FunFam D6-type cyclin 69 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2209g00006 Vium-Chr2209 76096 77944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2209g00006 9 281 Core Cell Cycle Gene Families AT4G34160 49.451 7.26e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2209g00006 K14505 - gmx:100804102 492.271