Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2209g00003 | ATGGCAACTGGAAGCAGAGACATCGATCGGATCAAGGGCCCATGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGGCTCGTGCAGGCTCTTGGGCCGAGAAACTGGACGATGATAAGCAAGTCTATTCCCGGTCGATCCGGCAAATCGTGCCGGCTACGCTGGTGCAACCAGCTCTCGCCGGAAGTAGAGCATCGCACTTTTACGCCGGAAGAGGACGATGCTATTATCAGGGCACACAGTAGGTTCGGTAATAAGTGGGCCACCATAGCACGTCTACTCAATGGCCGCACCGATAACGCCGTCAAAAATCACTGGAACTCCACTCTCAAGAGAAAATGTTCCGCCCTTGGTCTCGATGCAACGGATCGTCCTCCCCTAAAAAGATCTGCCAGTGTCAGCGCGGGTTATTTAAACCCGAGCAGTCCATCTGGGTCCGATTTAAGCGATCCGGGCAAGCCGGCTCTGTCGACTCCTTCTGCATCGGCCTTCTGCAGGCCCAATCTCATGGAAACCGCTTCTTCACTCTCCGATCCAGCCACGTCACTGAGTTTATGTCTTCCTGGGTTAAACTCGGAGCCTATACAGAGGAGTTTATATCTTCCTGGGTTAAGCTCGGAGCCTGAACAGCGGCCACCATCCCCGGCACAGCCTTCTCCACCTCCTCCTCCTTCAGCGGTGTCCACGGTGGAAGAGCGTAGAAAGCAATTGTTCAATCCGGAGTTTTTGAGGGTGATGCAAGAAATGATAAGGAAGGAAGTGAGGAATTACATGTCAGGGATGGAGGTGAAGAATGGTTTGAGAATACAAACGGAAGTCATTGGAAAAGCGGTGGTGAAGCGCATGGGAATCAGCAACATCAAGTGA | 864 | 0.5336 | MATGSRDIDRIKGPWSPEEDEALQRLVQALGPRNWTMISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPEEDDAIIRAHSRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSALGLDATDRPPLKRSASVSAGYLNPSSPSGSDLSDPGKPALSTPSASAFCRPNLMETASSLSDPATSLSLCLPGLNSEPIQRSLYLPGLSSEPEQRPPSPAQPSPPPPPSAVSTVEERRKQLFNPEFLRVMQEMIRKEVRNYMSGMEVKNGLRIQTEVIGKAVVKRMGISNIK | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2209g00003 | 287 | MobiDBLite | consensus disorder prediction | 119 | 158 | - | - | |
Vium2209g00003 | 287 | Gene3D | - | 11 | 63 | - | - | |
Vium2209g00003 | 287 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 7 | 62 | IPR017930 | - | |
Vium2209g00003 | 287 | SMART | sant | 11 | 60 | IPR001005 | - | |
Vium2209g00003 | 287 | SMART | sant | 63 | 111 | IPR001005 | - | |
Vium2209g00003 | 287 | Gene3D | - | 65 | 128 | - | - | |
Vium2209g00003 | 287 | FunFam | Transcription factor MYB44 | 66 | 112 | - | - | |
Vium2209g00003 | 287 | CDD | SANT | 14 | 56 | IPR001005 | - | |
Vium2209g00003 | 287 | MobiDBLite | consensus disorder prediction | 202 | 227 | - | - | |
Vium2209g00003 | 287 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 64 | 113 | IPR017930 | - | |
Vium2209g00003 | 287 | PANTHER | MYB PROTEIN-RELATED | 12 | 214 | - | - | |
Vium2209g00003 | 287 | ProSiteProfiles | Myb-like domain profile. | 7 | 58 | IPR001005 | - | |
Vium2209g00003 | 287 | FunFam | MYB transcription factor | 12 | 63 | - | - | |
Vium2209g00003 | 287 | ProSiteProfiles | Myb-like domain profile. | 59 | 109 | IPR001005 | - | |
Vium2209g00003 | 287 | Pfam | Myb-like DNA-binding domain | 66 | 108 | IPR001005 | - | |
Vium2209g00003 | 287 | Pfam | Myb-like DNA-binding domain | 12 | 58 | IPR001005 | - | |
Vium2209g00003 | 287 | CDD | SANT | 66 | 109 | IPR001005 | - | |
Vium2209g00003 | 287 | MobiDBLite | consensus disorder prediction | 133 | 158 | - | - | |
Vium2209g00003 | 287 | MobiDBLite | consensus disorder prediction | 207 | 226 | - | - | |
Vium2209g00003 | 287 | SUPERFAMILY | Homeodomain-like | 9 | 105 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2209g00003 | Vium-Chr2209 | 29726 | 31254 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2209g00003 | 6 | 264 | MYB Transcription Factor Family | AT4G37260 | 51.220 | 3.09e-84 | 254 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Vium2209g00003 | Myb_DNA-binding | 2.4e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2209g00003 | K09422 | - | gmx:778174 | 376.326 |