Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2209g00003 ATGGCAACTGGAAGCAGAGACATCGATCGGATCAAGGGCCCATGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGGCTCGTGCAGGCTCTTGGGCCGAGAAACTGGACGATGATAAGCAAGTCTATTCCCGGTCGATCCGGCAAATCGTGCCGGCTACGCTGGTGCAACCAGCTCTCGCCGGAAGTAGAGCATCGCACTTTTACGCCGGAAGAGGACGATGCTATTATCAGGGCACACAGTAGGTTCGGTAATAAGTGGGCCACCATAGCACGTCTACTCAATGGCCGCACCGATAACGCCGTCAAAAATCACTGGAACTCCACTCTCAAGAGAAAATGTTCCGCCCTTGGTCTCGATGCAACGGATCGTCCTCCCCTAAAAAGATCTGCCAGTGTCAGCGCGGGTTATTTAAACCCGAGCAGTCCATCTGGGTCCGATTTAAGCGATCCGGGCAAGCCGGCTCTGTCGACTCCTTCTGCATCGGCCTTCTGCAGGCCCAATCTCATGGAAACCGCTTCTTCACTCTCCGATCCAGCCACGTCACTGAGTTTATGTCTTCCTGGGTTAAACTCGGAGCCTATACAGAGGAGTTTATATCTTCCTGGGTTAAGCTCGGAGCCTGAACAGCGGCCACCATCCCCGGCACAGCCTTCTCCACCTCCTCCTCCTTCAGCGGTGTCCACGGTGGAAGAGCGTAGAAAGCAATTGTTCAATCCGGAGTTTTTGAGGGTGATGCAAGAAATGATAAGGAAGGAAGTGAGGAATTACATGTCAGGGATGGAGGTGAAGAATGGTTTGAGAATACAAACGGAAGTCATTGGAAAAGCGGTGGTGAAGCGCATGGGAATCAGCAACATCAAGTGA 864 0.5336 MATGSRDIDRIKGPWSPEEDEALQRLVQALGPRNWTMISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPEEDDAIIRAHSRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSALGLDATDRPPLKRSASVSAGYLNPSSPSGSDLSDPGKPALSTPSASAFCRPNLMETASSLSDPATSLSLCLPGLNSEPIQRSLYLPGLSSEPEQRPPSPAQPSPPPPPSAVSTVEERRKQLFNPEFLRVMQEMIRKEVRNYMSGMEVKNGLRIQTEVIGKAVVKRMGISNIK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2209g00003 287 MobiDBLite consensus disorder prediction 119 158 - -
Vium2209g00003 287 Gene3D - 11 63 - -
Vium2209g00003 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Vium2209g00003 287 SMART sant 11 60 IPR001005 -
Vium2209g00003 287 SMART sant 63 111 IPR001005 -
Vium2209g00003 287 Gene3D - 65 128 - -
Vium2209g00003 287 FunFam Transcription factor MYB44 66 112 - -
Vium2209g00003 287 CDD SANT 14 56 IPR001005 -
Vium2209g00003 287 MobiDBLite consensus disorder prediction 202 227 - -
Vium2209g00003 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Vium2209g00003 287 PANTHER MYB PROTEIN-RELATED 12 214 - -
Vium2209g00003 287 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Vium2209g00003 287 FunFam MYB transcription factor 12 63 - -
Vium2209g00003 287 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vium2209g00003 287 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Vium2209g00003 287 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Vium2209g00003 287 CDD SANT 66 109 IPR001005 -
Vium2209g00003 287 MobiDBLite consensus disorder prediction 133 158 - -
Vium2209g00003 287 MobiDBLite consensus disorder prediction 207 226 - -
Vium2209g00003 287 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2209g00003 Vium-Chr2209 29726 31254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2209g00003 6 264 MYB Transcription Factor Family AT4G37260 51.220 3.09e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2209g00003 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2209g00003 K09422 - gmx:778174 376.326