Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2208g00018 ATGCGGCGGAACAGTCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCCGTGGAGGAGGGTCCAATAGAAGGGGATTCGGTGGAGGCAGGCGCAGGGATAACAACAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGACCTGAGGAGCTTCGTGTTCCTTTCGAGCGATTCGGACCTGTTCGCGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGACGCCTCAGAGGCACAGTACCATATGAACAGACAGATCTTTGCTGGAAGGGAAATATCTGTGGTTGTTGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGACACAGAACCAGAACCAGAGGACCGGCAGGCTATGGAGGCCGAAGGTCTTCTCATTATGGGCGTTCTCGATCTCGCTCAATCACTAGATCACGCTCACCACCTTATCATTCTGGTTCTAGAAGTCGGTATCGTTCAAGGTCTTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCGTAGATCACCAAGAGGTCCTCCCAGGGAGCGAGATGGTGAACTAAAGCGTAGATCTTATTCTCCTGCATATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAAGCTGATCGAGGCCAGTGGAAGTCATCGAGATCACCCCTTGGGTCTAGATCAAGATCTGCTGACCTGTCACCTAGGCGTGGAAGATGA 804 0.5 MRRNSPAYYSPPRRGYGGRGGGSNRRGFGGGRRRDNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRTRGPAGYGGRRSSHYGRSRSRSITRSRSPPYHSGSRSRYRSRSYSPAPRRQSDYSVSPRRQAEHRRSPRGPPRERDGELKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPLGSRSRSADLSPRRGR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2208g00018 267 MobiDBLite consensus disorder prediction 218 233 - -
Vium2208g00018 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Vium2208g00018 267 MobiDBLite consensus disorder prediction 1 42 - -
Vium2208g00018 267 SMART rrm1_1 40 113 IPR000504 GO:0003723
Vium2208g00018 267 MobiDBLite consensus disorder prediction 118 267 - -
Vium2208g00018 267 MobiDBLite consensus disorder prediction 186 212 - -
Vium2208g00018 267 SUPERFAMILY RNA-binding domain, RBD 35 146 IPR035979 GO:0003676
Vium2208g00018 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 220 - -
Vium2208g00018 267 MobiDBLite consensus disorder prediction 152 185 - -
Vium2208g00018 267 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 32 173 - -
Vium2208g00018 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Vium2208g00018 267 Gene3D - 29 152 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2208g00018 Vium-Chr2208 154907 158240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2208g00018 7 101 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 5.42e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2208g00018 K12900 - gmx:100804294 400.979