Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2208g00009 ATGGGTAATATTGAACTGGTAGAGAAAATTGTAGTTGTTCCTGAGCAACCTACACCACGCAAGAGAATGTTCTTGTCAAATATTGATCTGTCCCTTGTTGTTTACCAAGATTCTGCCTCCTTTTTTGACCCTCCAACTACCCAAATGAGTTTCAGTGAGATTTGTAACAAATTATACAGTGCACTTGGTAAAATGCTTGTGCAGTATGATTTTATGGCTGGCAGACTAGTGCCAAGTTTGGAAGAGACTCACAGATTTGAAATTGACTGCAATGGTGCTGGCATTGTGGTTGCAGCTGCAAGAACTGACAGAAAATTGAGTGAATTTGGGGTGATTTCTACACCTAATCCACAGTTGAGGGAATTAGTTGTTTTTTTACATGAAGGGTGTGACCAAGAAACTGATCTGAAAGAAAAACCCCTTGCATCCTTACAGCTGACTCAGTTTGGTTGTGGAAGTTTGGCACTTGCTTCTCACTACAATCACTGCACTTTGGACGGTTTTGCAATAAGAGATTTTGAGGTAAACTTAGGGGCATTAACACGTGGTGAGGATCTCATCACAGTACCTAATGCAGATAGAACACTGCTGAGAGCAAGAAATCCTCCAATTGTAAGCCATCCACATTTTGAGTACTCAAAATCTACTGTGACACACAACTTGTTTACTCTCCGAGGCAAAAGTGGTACCAATGTCATGCAGTCCCTGCCAGAAAACCAGATTCGAGTGCTTCATTTGTCGCCACAAAGCATTGCTAGCTTCAAAAAGAAAGCCCTGGAGGAGGACAAAACCTTAAAGAACACAACCACTTTTCAGGTTGTTGCTGCCAAAATATGGAAGGCAAGAAGCATTGCAACAAGGATGTCGGAGGAAAAAGTGTCCACAATGCTGTTTCCAGTGGATGTGAGGAAAAGGGTTGTTCCTGAACTCCCAGATGGGTTTGCAGGGAATGCATTGGTCCCTGGTTTTGCAAGAGCAACTGTGAGGGAGCTGAAGGAGCTAGAAGATTCATGTCACATAAGGAAGGTGCAAGAAGGGCTTGAAAGGTTGAATAATGAGTACATTAAGTCAGGAATAGATTGGTTAGAAGTGAACAAAGGAGCACCTTGTATGGAAGATAGTTTCTCCTTGGTGGCATGGTGGAGATTGGGGTTAGAGGAACAGCTTTTTGCATGGGGTAGACTCAAGTGTGCTACTCCACTACAAGTTAAGCCTGGTTTGGTCATGCTATTGCCAGGGCCACAAGATCAAGGAGGCATTAACATATGCCTTGATTTACCTGAGGATCAAATGAAACACTTTAGTAGGATAATGCTACAAATCTAG 1326 0.4261 MGNIELVEKIVVVPEQPTPRKRMFLSNIDLSLVVYQDSASFFDPPTTQMSFSEICNKLYSALGKMLVQYDFMAGRLVPSLEETHRFEIDCNGAGIVVAAARTDRKLSEFGVISTPNPQLRELVVFLHEGCDQETDLKEKPLASLQLTQFGCGSLALASHYNHCTLDGFAIRDFEVNLGALTRGEDLITVPNADRTLLRARNPPIVSHPHFEYSKSTVTHNLFTLRGKSGTNVMQSLPENQIRVLHLSPQSIASFKKKALEEDKTLKNTTTFQVVAAKIWKARSIATRMSEEKVSTMLFPVDVRKRVVPELPDGFAGNALVPGFARATVRELKELEDSCHIRKVQEGLERLNNEYIKSGIDWLEVNKGAPCMEDSFSLVAWWRLGLEEQLFAWGRLKCATPLQVKPGLVMLLPGPQDQGGINICLDLPEDQMKHFSRIMLQI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2208g00009 441 Pfam Transferase family 4 435 - -
Vium2208g00009 441 Gene3D - 227 441 IPR023213 -
Vium2208g00009 441 Gene3D - 2 214 IPR023213 -
Vium2208g00009 441 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2208g00009 Vium-Chr2208 96493 98433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2208g00009 4 441 Monolignol Biosynthesis Gene Families AT5G48930 27.902 6.37e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2208g00009 K15400 - gmx:100801822 787.334