Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2206g00002 ATGGATCATCAAGAGATAGCAGACATAGAGTCTCAAAATGTGGATACCCCCCCTGACGTATCACACAAAGTAAAACGTCAAGTAACTCTTAAGTTTGATGACGTTGTGTACAAAATTAAGACAAGGAAAGGTGGATTATTTAGGAAGAAGGGAGAGACAGTTGTAAAAGAGATACTGAAGGGAGTGACAGGTGTTGTTGAACCTGGTGAAATGCTGGCCATGTTAGGTCCTTCTGGGAGTGGTAAAACAACACTGCTGACAGCATTGGGAGGTAGGCTTGGAGGGAAGCTTCATGGAAGCATAACATACAATGGTGAAGCCTTCTCAAATGCCATGAAGAGGAACACTGGCTTTGTTACCCAAGATGATGTTCTCTACCCCCACTTGACTGTGCTTGAAACCCTGATCTTTACTGCACTTCTCAGATTGCCCAACAGTATCACAAAGGAAAAGAAAGTTGAGCATGCAAAAGGGGTGATAGATCAACTCGGTTTAACCAGGTGCAAGGATAGCATAGTTGGAAGCCCTTACTTGAGGGGGGTTTCTGGAGGAGAGAGAAAGAGGGTTAGCATAGGACAAGAACTACTCATAAATCCAAGCTTGTTGTTTCTTGATGAACCTACTTCTGGCCTAGACTCAACCACAGCACAAAGAATTGTCTCGACCTTGTGGGAACTAGCATGTGGAGGGAGAACTGTTGTGATGACAATTCACCAACCTTCAAGTAGGCTATACTACATGTTTCATAAGGTGTTAATGCTATCTGAAGGGAACACATTGTACTTTGGAAAGGGATCTGAAGCCATAGAGTATTTTTCTAATATGGGATATGCCCCATCTTTGGCCATGAACCCCTCAGATTTCCTTTTGGATCTTGCAAACGGTATCTACACTGAAGAATTTAATGCGGATCATATTATAGATAAACAGAAATTGATTTCGGTGTATAAGGGAAACTGTGCTGCACAATCGAAGCCGGCACTTAAAGGAATCAATGACTCTGGCAAAGACCAGAATAGATTTAAAGAAGAGGACTCCGAAAAATGGCCTACCAACTGGGGACAGCAATTCCTTGTACTATTAAGAAGAGACATCAAAGAGAGAAAGCATGAATCATTCTCTCTTTTGCGTGTTTGTCAAGTCCTTGTGGTTGCTCTAATTTCAGGACTACTCTGGTGCAAGTCTGATATCTCACATTTGCAGGATCAGATTGGGCTTCTGTTCTTCATATCTGGCTTTTGGGGTTTCTTCCCTCTCTTTCAAGCAATTTTCACCTTTCCTCAAGAGCTAATGATGCTACAGAAAGAAAGATCTTCAGGAATGTACAGGCTTTCCTCATATTTCATGTCAAGGGTGGTAGCTGACCTTCCTATGGAACTTGTTCTTCCCACCATATTCCTTTTCATAACCTATTGGATGGCAGGGTTGAAGGCCAATGTGGTGAACTTCATATGCACATTGCTCTCTCTCTTACTCAATGTGTTAGTAGCACAAGGTCTAGGTCTTGCCCTTGGTGCTTCTGTGATGGATCAAAAAGCTGCAACAACACTTGCCTCAGTGATCATGCTATGCTTTTTGCTGGCTGGTGGATTTTATGTTCAGCATGTTCCAAAGTTTATAGCATGGATAAAGTACATTTCTATCAGCTACTACACCTACCAGCTGTTCATTGGGTCTCAATATAGCTATGGTGAGACATACCCTTGTTCCACTGGACAGTGTCAAATTGTGGAGTTTCCTTCCATAAAGCAAATAGGAGTTCAATTTGGATTGCATGACCAACTCATGGCTGCATTAGGTCTGGTGATAATGCTCATAGTTTACAGAGTTATAGCCTATGTTGCCCTTATGAGAATTGGAGTGACCAAGAACTAG 1875 0.4224 MDHQEIADIESQNVDTPPDVSHKVKRQVTLKFDDVVYKIKTRKGGLFRKKGETVVKEILKGVTGVVEPGEMLAMLGPSGSGKTTLLTALGGRLGGKLHGSITYNGEAFSNAMKRNTGFVTQDDVLYPHLTVLETLIFTALLRLPNSITKEKKVEHAKGVIDQLGLTRCKDSIVGSPYLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWELACGGRTVVMTIHQPSSRLYYMFHKVLMLSEGNTLYFGKGSEAIEYFSNMGYAPSLAMNPSDFLLDLANGIYTEEFNADHIIDKQKLISVYKGNCAAQSKPALKGINDSGKDQNRFKEEDSEKWPTNWGQQFLVLLRRDIKERKHESFSLLRVCQVLVVALISGLLWCKSDISHLQDQIGLLFFISGFWGFFPLFQAIFTFPQELMMLQKERSSGMYRLSSYFMSRVVADLPMELVLPTIFLFITYWMAGLKANVVNFICTLLSLLLNVLVAQGLGLALGASVMDQKAATTLASVIMLCFLLAGGFYVQHVPKFIAWIKYISISYYTYQLFIGSQYSYGETYPCSTGQCQIVEFPSIKQIGVQFGLHDQLMAALGLVIMLIVYRVIAYVALMRIGVTKN 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2206g00002 624 Pfam ABC-2 type transporter 238 304 IPR043926 GO:0140359
Vium2206g00002 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 275 IPR027417 -
Vium2206g00002 624 FunFam ABC transporter G family member 22 46 275 - -
Vium2206g00002 624 Gene3D - 43 276 IPR027417 -
Vium2206g00002 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 23 613 - -
Vium2206g00002 624 Pfam ABC-2 type transporter 355 561 IPR013525 GO:0016020|GO:0140359
Vium2206g00002 624 CDD ABCG_EPDR 28 263 - -
Vium2206g00002 624 SMART AAA_5 68 258 IPR003593 GO:0016887
Vium2206g00002 624 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524|GO:0016887
Vium2206g00002 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 281 IPR003439 GO:0005524
Vium2206g00002 624 Pfam ABC transporter 59 209 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2206g00002 Vium-Chr2206 30433 33553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2206g00002 57 295 Calmodulin-binding Proteins AT2G36910 26.721 6.88e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2206g00002 K05681 - gmx:100816135 1003.82