Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2206g00001 ATGGGAGTTCCAGAGAAAGACCCTCTTGCCCAGTTGAGTCTACCACCTGGTTTTCGGTTCTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTCTGCCGCAAGGTCGCCGGCCACCATTTCTCTCTCCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTCCCAAGCAAGGCGATTTTCGGGGAGAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCGGGGTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAGGGTAGAAAAGTTGGCATAAAAAAAGCTCTGGTCTTTTACGTTGGCAAAGCTCCTAAAGGCACCAAAACAAATTGGATCATGCACGAGTATCGCCTCCTTGACTCTTCCCGAAAGACCACCGGAACCAAGCTGGACGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAGGCGGCGCAGAACGGCGTCGTTTCGAGCAGGGAACACACTCAATACAGCAACGGTTCGTCGTCGTCGTCTTCGTCCCATCTGGACGACGTTCTGGAATCGCTGCCGACGATCGACGAACGATGTTTCGCGATGCCACGTGTCAGTACGATGCAGGCACAGCAGGAGGAGAAGGTGAGCGTTCATCAGAACCTGGGTGGGTTGGTGGATTGGGCCAACCCTGCGGTTCTGAATTCGGTGGGTGATTTCGTTTCGGGGAATAATCAAGTGGTGCAGGAGCACACACAGGGGATGGTGAACTACGGCGGGTGCAATGACCTTTATGTCCCCACCTTCTGCCACGTGGAGTCTACGCTTCCGCAAAAGATGGAGGAAGAGGTGCAAAGCGGCGTGAGAAGCCAAAACAACAATAACCCGTGGTTTCTTCAGAACGATTTTACGCAGGGGTATCAGAACCCGGTGGACACGTGTGGGTTTAAGTTCCCGGTTCAGCCGGTGGGATTCGGGTTCAGGCAATGA 1020 0.5314 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKTTGTKLDDWVLCRIYKKNSSAQKAAQNGVVSSREHTQYSNGSSSSSSSHLDDVLESLPTIDERCFAMPRVSTMQAQQEEKVSVHQNLGGLVDWANPAVLNSVGDFVSGNNQVVQEHTQGMVNYGGCNDLYVPTFCHVESTLPQKMEEEVQSGVRSQNNNNPWFLQNDFTQGYQNPVDTCGFKFPVQPVGFGFRQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2206g00001 339 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Vium2206g00001 339 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vium2206g00001 339 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Vium2206g00001 339 FunFam NAC domain-containing protein 72-like 23 167 - -
Vium2206g00001 339 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vium2206g00001 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 221 - -
Vium2206g00001 339 MobiDBLite consensus disorder prediction 168 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2206g00001 Vium-Chr2206 770 2448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2206g00001 1 274 NAC Transcription Factor Family AT3G15500 62.069 2.41e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2206g00001 NAM 6.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2206g00001 - - gmx:100170718 612.838