Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2201g00002 ATGAAGAGGGAGTGCGAACAGCTTGGTTCCAGCGCAGGGAACTCAAGCTGCGGGTACTCGAGTGACAAATCGAACATTTGGGACGAGGAAGGAGGCATGGACGAACTTCTGGCGGTGGTGGGTTAGAAGGTGAGATCTTTCGACATGGCGGAAATCGTGCAGAAGTTGGAGCGTCTTGAAGAAGCCATGGGAAACATTCAAGACGATCTCAAGGAACTTTCAGATGGCGCCGCGCACTATAACCCCTCTGATATCTCCAATGTCGAGACCATGCTCTGCAATTTCGACTTGCTTCCTCCAGAAGAACCAGATAAGGGCTACCCCTCTTCAGACTAGGATCTCAAGGCTATTCCAGGGAAAGCAATTTACGACAGAGGTGTTAGCACCACGCCAAATGCTAAGCGTCGCAAATCTACCAAGTCAACGCGTGCTTTTCTGGTTGTTGACTCACAGAAGAACGGGATCCTTCACGTGCACAGTCTCATGGCGTGCGCGGAGGCCGTAGAAAACAACAACCTCGTCGTCCCGGAGTCGTTGGTGAAGCAGACCGGATTCCTCGCGGTGGTTGGAGCTATGCAGAAAGTCACCACCTACTTTACGGAAGTGCTCACATGGCGAATCTATCGCATTTTCCCTCTCCAGCACTCAATCCCAGACTCTCTCGAGATTCACTTCTATGAAACCTGTCCTTACACCAAGTTCGCACTCTTCACCGCGAACCAAGCTATTCAGGAAGCGTTCCAAGGGAAGAGCCACGTTCACGTCATAGATTTCGGAATCAACCAGGGGATGCAGTGGCCAACACTGTTGCAGGCTCTCGGCCTTCGTCCCGGCGGTCCTCTCACTTTCCGGCTCATCGGAATCGGGCCTCCAGCAGCGGATAACTCTGACCAACTCCAGGAGGTCGGATGGAAGCTCGCACAGTTGGCAGAGACGATTCACGTGCGGATTGAGTACCACGGCTTTGGCGCCATCGATCCGTTGTCCATAATTCGGTCGGAGATTCTGACAGTGGTGGAGCAAGAATCGAATCATAATGGACTGAGGTTTCTTGACCGCTTCATTGAGTCGCTACACTATTATTCAACTTTGTTCGACCCGGTGGAGGGCTCGCCTGTGAATCCAGAGAATAAGGCGATGACGGAGGTTTACCTAGGAAAAATATGTAACGTGGTGGCTTGCGAGGGAATAGATCGCGTGGAATGGCACGAGACCCTTAACCAGTGGCAGAACCGGTTCAGTTCGACAGGGTTTTGTCCGGTTCGTTTGAATTCCAACGCGTTCAAGCAGGCTAGCATGTTGCTCGCTCTTTTTGCTGGTGGGGATGGGTATAGGGTGGAGGAGAACAGTGGGTGTCTCATGCTGGGATGGCACACAAGGGCCTTGATTGCCACTTTCGCGTGGCAACTCGCAACGAAATCGGTGGTTGCACTCTGA 1437 0.5247 MKRECEQLGSSAGNSSCGYSSDKSNIWDEEGGMDELLAVVGXKVRSFDMAEIVQKLERLEEAMGNIQDDLKELSDGAAHYNPSDISNXVETMLCNFDLLPPEEPDKGYPSSDXDLKAIPGKAIYDRGVSTTPNAKRRKSTKSTRAFLVVDSQKNGILHVHSLMACAEAVENNNLVVPESLVKQTGFLAVXVGAMQKVTTYFTEVLTWRIYRIFPLQHSIPDSLEIHFYETCPYTKFALFTANQAIQEAFQGKSHVHVIDFGINQGMQWPTLLQALGLRPGGPLTFRLIGIGPPAADNSDQLQEVGWKLAQLAETIHVRIEYHGFGAIDPLSIXIRSEILTVVEQESNHNGLRFLDRFIESLHYYSTLFDPVEGSPVNPENKAMTEVYLGNXICNVVACEGIDRVEWHETLNQWQNRFSSTGFCPVRLNSNAFKQASMLLALFAGGDGYRVEENSGCLMLGWHTRALIATFAWQLATKSVVAL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2201g00002 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 145 324 IPR005202 -
Vium2201g00002 482 Pfam Transcriptional regulator DELLA protein N terminal 34 98 IPR021914 -
Vium2201g00002 482 ProSiteProfiles GRAS family profile. 149 473 IPR005202 -
Vium2201g00002 482 Pfam GRAS domain family 334 473 IPR005202 -
Vium2201g00002 482 Pfam GRAS domain family 159 324 IPR005202 -
Vium2201g00002 482 SMART DELLA_2 34 106 - -
Vium2201g00002 482 Coils Coil 49 76 - -
Vium2201g00002 482 Gene3D - 32 96 IPR038088 -
Vium2201g00002 482 MobiDBLite consensus disorder prediction 1 24 - -
Vium2201g00002 482 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2201g00002 Vium-Chr2201 24749 26680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2201g00002 25 476 GRAS Transcription Factor Family AT1G14920 54.302 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2201g00002 GRAS 8.6e-46 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2201g00002 K14494 - gmx:547718 711.064