Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2201g00001 ATGTTATTACCACCTTCCCTCAATGCTTCTCGTCTATATGACCCCAACCAACCAACCACATTAACTGATAAACCCCTCTCCCACACTCTCCCAACCCAAATTATGTTGTTCGTAAAAGCCCTACTTCAGCTCTCCTATTTCTTTCTTTCCGTCGTGATGACTACCACCTTGGTGGCCGCCGCCGATGACGCGGTGATGTCCAATTTCCTTAAATCGCTGAAGCCACCACCTCCAGGTTGGTCTCAGACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCGTCCAACCGCGTCACCAGCATAAGCCTCGCTTCAAAGTCCCTCACTGGAACGCTCCCCTCCGATCTCAATTCCCTCTCTCAACTCCGTTCCCTCTCTCTCCAAGACAATGCACTCTCGGGCCCCCTCCCCTCGCTCGCCCAACTCTCCTTCCTCCAAACGGCCTACCTCAACCGCAACAACTTTTCAGCCGTTCCCTTCGCCGCCTTCGCCTCCCTGAACTCCCTCCAAACCCTCAGCCTAGCCTCCAACCCTTACCTCTCACACTGGACTTTCCACACCGATCTCACCTCCTCCACCAACCTAATCGACCTCGACCTCGCCTCTGTTTCCCTCTCCGGTGCCTTACCCGACATTTTCCACAAATTTCCCTCTCTACATAGTCTTCGCCTCTCCTACAACAACTTGACTGGTAGTTTACCCTCCTCTCTCGCCATTTCCACAATCGCCTCGCTCTGGCTCAACAACCAGGCAACCGGCTTGTCCGGTACTCTCTCCGTTCTCTCCAACATGACGCAGTTGAGCCAGGCCTGGCTCCACAAGAACCAGTTCACCGGTTCCATTCCAGATTTGTCCCAATGCAAGGGCCTGTTTGACTTGCAGCTCCGAGATAATCGGCTAACCGGCGTGGTTCCTATTTCCTTGACGACTCTTTCGAGTTTAAAGAATGTTTCGCTGGATAACAACGTGCTTCAGGGGCCTGTGCCTGCTTTTGGGAAGGGTGTGAAGGTGACTCTCGATGGAATTAATAGCTTTTGTCTCGATACTCCCGGTGATTGTGATCCCAGGGTGATGGTTTTGCTTCAGATTGCTGAAGCGTTTGGGTATCCCATTCAGTTGGCGAATGCGTGGCAGGGGAATGACCCTTGTAACGGCTGGAACTTTGTTGTGTGTTCCACTGGGAAGATTGTTACTGTCAATTTCGCGAAGCAGGGTTTTTCTGGTACCATCTCGTCTGCATTTTCGCAATTAACTGATTTGCGCAGCTTGTTTCTCAATGGAAATAACTTGACCGGTTCTATTCCTGAGAGTTTGACCTCTTTGCCTCAGCTTCAGACTCTTGATGTGTCCGATAACAACCTCTCTGGAGAGATTCCTAAGTTCCCGTCCAAGGTGAAGTTAATGACTACCGGTAATGCTAGGCTTGGGAAGGCTCCTAATCCTGGAGGTGGAGTAAGTGGGTCTACTCCTTCAGGGTCTCCATCTGGTGGAAGTGGTTCTGAATCTGCAAAGGGTAGTGCTTCTTTGTCGCCAGGTTGGATTGGTGGTATAGTTGTTATTGTTTTGTTTTTTACTGGAGTAGTATTGTTTCTGGCTTGGAAATGTTATGCCAAAAGGCAGCGGCGGAAGTTCAGGAGGGTTAATGGTCGTGAAAATGGCACAGGAAGCTTTAAAATTGAGTCTATCAATGTTTATAATGGTTATGGTGGTGTTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACGTTCTTGCTGCTTTTGAAGGTCGAAATGGGTCAATTTCTATTCAAGTTCTTCTACAAGTTACCAATAATTTCAGTGAGGAGAATATTTTAGGTAGGGGAGGGTTTGGAGTAGTTTATAAGGGCGAGTTACATGATGGAACAAAGATTGCTGTTAAGAGGATGGAATCTGTTGCAATGGGAAATAAAGGACTTAACGAGTTCCAAGCAGAGATTGCAGTTCTCAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTCTTGGGTATTGCATCAATGGAAATGAAAGGCTTTTGGTATATGAGTATATGCCTCAAGGTACATTAACACAACACCTGTTTGAGTGGCAGGGACATGGCTATGCTCCCTTGACATGGAAACAAAGGGTAACAATAGCTTTGGATGTTGCACGAGGGGTGGAATACTTGCATAGCTTAGCTCAACAAAGCTTCATTCACAGAGACTTAAAACCCTCAAATATACTACTTGGTCATGACATGAGAGCAAAGGTTGCAGATTTTGGATTGGTTAAAAATGCACCAGATGGAAAGTATTCTATTGAGACTCGGTTGGCTGGAACATTTGGATATCTTGCACCTGAATATGCTGCCACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGTGTAGTTTTGATGGAACTTGTTACCGGTAGAAAGGCATTGGATGATACCGTGCCAGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGACTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAACCCCGACGAGGAAACTACGGAGAGCATGTATAAGGTGGCTGAACTGGCTGGCCATTGCACTGCTCGTGAACCATATCAAAGGCCAGATATGGGTCATGCAGTGAATGTCTTAGTTCCTCTTGTGGAGCAATGGAAACCTATTAGTCATGAAGAAGAGGACAGCGGTAACGGTGACTTTCAGATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCGATGAAGGCACTTCCTCGATATTTAATGATGTATCCATCTCACAAACCCAATTAAGCATCCCCTCTAAACCTGTCGGATTTGCAAACTCCTTCGATTCACTGGATTGCCGGTGA 2880 0.4719 MLLPPSLNASRLYDPNQPTTLTDKPLSHTLPTQIMLFVKALLQLSYFFLSVVMTTTLVAAADDAVMSNFLKSLKPPPPGWSQTTPFCQWKGIQCDSSNRVTSISLASKSLTGTLPSDLNSLSQLRSLSLQDNALSGPLPSLAQLSFLQTAYLNRNNFSAVPFAAFASLNSLQTLSLASNPYLSHWTFHTDLTSSTNLIDLDLASVSLSGALPDIFHKFPSLHSLRLSYNNLTGSLPSSLAISTIASLWLNNQATGLSGTLSVLSNMTQLSQAWLHKNQFTGSIPDLSQCKGLFDLQLRDNRLTGVVPISLTTLSSLKNVSLDNNVLQGPVPAFGKGVKVTLDGINSFCLDTPGDCDPRVMVLLQIAEAFGYPIQLANAWQGNDPCNGWNFVVCSTGKIVTVNFAKQGFSGTISSAFSQLTDLRSLFLNGNNLTGSIPESLTSLPQLQTLDVSDNNLSGEIPKFPSKVKLMTTGNARLGKAPNPGGGVSGSTPSGSPSGGSGSESAKGSASLSPGWIGGIVVIVLFFTGVVLFLAWKCYAKRQRRKFRRVNGRENGTGSFKIESINVYNGYGGVPSELQSQSSGDRSDVLAAFEGRNGSISIQVLLQVTNNFSEENILGRGGFGVVYKGELHDGTKIAVKRMESVAMGNKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWQGHGYAPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGHDMRAKVADFGLVKNAPDGKYSIETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELVTGRKALDDTVPDERSHLVTWFRRLLINKENIPKAIDQILNPDEETTESMYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPISHEEEDSGNGDFQMSLPQALRRWQADEGTSSIFNDVSISQTQLSIPSKPVGFANSFDSLDCR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2201g00001 959 CDD STKc_IRAK 617 890 - -
Vium2201g00001 959 Pfam Leucine rich repeat N-terminal domain 68 95 IPR013210 -
Vium2201g00001 959 Pfam Leucine rich repeat N-terminal domain 362 394 IPR013210 -
Vium2201g00001 959 Gene3D Transferase(Phosphotransferase) domain 1 689 910 - -
Vium2201g00001 959 SUPERFAMILY L domain-like 69 468 - -
Vium2201g00001 959 Gene3D Ribonuclease Inhibitor 61 353 IPR032675 -
Vium2201g00001 959 Pfam Leucine rich repeat 413 456 IPR001611 GO:0005515
Vium2201g00001 959 FunFam receptor protein kinase TMK1 572 688 - -
Vium2201g00001 959 ProSiteProfiles Protein kinase domain profile. 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2201g00001 959 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Vium2201g00001 959 FunFam receptor protein kinase TMK1 689 906 - -
Vium2201g00001 959 MobiDBLite consensus disorder prediction 474 506 - -
Vium2201g00001 959 MobiDBLite consensus disorder prediction 10 24 - -
Vium2201g00001 959 FunFam Receptor-like kinase TMK4 60 353 - -
Vium2201g00001 959 SUPERFAMILY Protein kinase-like (PK-like) 598 887 IPR011009 -
Vium2201g00001 959 Gene3D Phosphorylase Kinase; domain 1 573 688 - -
Vium2201g00001 959 Pfam Protein tyrosine and serine/threonine kinase 614 884 IPR001245 GO:0004672|GO:0006468
Vium2201g00001 959 FunFam Leucine-rich repeat receptor-like kinase 357 480 - -
Vium2201g00001 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Vium2201g00001 959 PANTHER OSJNBA0070M12.3 PROTEIN 47 959 - -
Vium2201g00001 959 MobiDBLite consensus disorder prediction 1 24 - -
Vium2201g00001 959 Gene3D Ribonuclease Inhibitor 357 481 IPR032675 -
Vium2201g00001 959 MobiDBLite consensus disorder prediction 486 506 - -
Vium2201g00001 959 SMART serkin_6 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2201g00001 Vium-Chr2201 17187 21069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2201g00001 100 887 Receptor kinase-like Gene Family AT5G07280 32.803 2.55e-92 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium2201g00001 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2201g00001 K00924 - gmx:100286794 1448.72