Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium219g00013 ATGGCACGTGAGTTCAACGATGTTGCAGCAACGCTCCAATCCATACGCTACAACCGCGGTTCCCTCCACCTTCTCGACCAGAGAAAGCTCCCTCTGGAGACCACTTACTTGGAAATTCGGGATTCAACAGATGGCTGGAATGCCATTCAGGATATGGTGGTCCGAGGAGCACCTGCTATTGCGATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGACGGTTTCAATGGATCAGCTGGTGAAGCTGTTTCCTTCCTGCAGAATAAATTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTGAATCTATCGGATGCTGCGGGAAAACTCAAAGAAGTCGTATCAAATGCTGCTGCTACCACTTCAGAGGGCAGGAGTGTTTTCCAGGCATTTATAGAAGCTGCTGAAGTTATGCTTGGGGATGATGTTGCCTCAAATCGAGCTATTGGCTCTTACGGAGCTAGCTGTATTCAGCAACAAACTGGGAAACAAAAGCTTTCTGTTTTGACGCATTGCAATACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTTTGGGTGTGATCCGTGCACTTCACAGTGCAGGAGTTCTAGAAAGGGCTTATTGCACTGAAACACGCCCGTTTAATCAAGGATCTAGACTTACTGCCTATGAGTTGGTGCATGAAAAAATACCAGCAACTCTTATTGCTGATTCTGCTACAGCTGCACTAATGAAAGCAGGAAGTGTGGATGCTATTGTTGTTGGGGCTGATCGTGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTGTCCGCAAAGTTTCATAATATACCTTTTTATGTGGCTGCCCCCCTCACCTCCGTTGATCTATCACTTTCTTCCGGACAAGAAATTGTAATTGAGGAGAGGTCTCCCAAGGAATTGTTGAACGCACGTGGAGGACTTGGAGAGCAGGTTGCTGCATCGGGAATTTCTGTGTGGAACCCAGCTTTTGATGTTACTCCTGCTAGTCTAATATCTGGGATCATCACGGAGAAGGGTGTCATTACGAAGACTTCTGCTGATGATGCATTCGACATTAAAGCTTTCGTACAGAAAACTGGTTAA 1119 0.4638 MAREFNDVAATLQSIRYNRGSLHLLDQRKLPLETTYLEIRDSTDGWNAIQDMVVRGAPAIAIAAALSLAVEVFNLDGFNGSAGEAVSFLQNKLEYLVSSRPTAVNLSDAAGKLKEVVSNAAATTSEGRSVFQAFIEAAEVMLGDDVASNRAIGSYGASCIQQQTGKQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSATAALMKAGSVDAIVVGADRVASNGDTANKIGTYSVALSAKFHNIPFYVAAPLTSVDLSLSSGQEIVIEERSPKELLNARGGLGEQVAASGISVWNPAFDVTPASLISGIITEKGVITKTSADDAFDIKAFVQKTG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium219g00013 372 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 12 364 IPR005251 -
Vium219g00013 372 Gene3D - 10 201 IPR027363 -
Vium219g00013 372 SUPERFAMILY NagB/RpiA/CoA transferase-like 10 357 IPR037171 -
Vium219g00013 372 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 40 355 IPR011559 GO:0044249
Vium219g00013 372 Pfam Initiation factor 2 subunit family 54 354 IPR000649 GO:0044237
Vium219g00013 372 FunFam Methylthioribose-1-phosphate isomerase 10 201 - -
Vium219g00013 372 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 9 369 - -
Vium219g00013 372 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 13 355 IPR005251 -
Vium219g00013 372 FunFam Methylthioribose-1-phosphate isomerase 167 365 - -
Vium219g00013 372 Gene3D - 202 367 IPR042529 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium219g00013 50 370 Eukaryotic Initiation Factors Gene Family AT2G05830 77.019 3.46e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium219g00013 K08963 - gmx:100799311 624.394