Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium219g00006 ATGGCCGCTGTTCGCTTCCACAACCACCTCCTTCTCCTCTTCTTCCACCTCTTCTTCACTCTCTCTTCTTCAACCGAAACCCAATCCCTCCTCCGTCTCAAGCAGTCCCTTGTCAACGGCGATCGCTCTCTCTCCTCATGGATCCCCAACGTCTCGCCTTGCTCTGGCACCTGGCTAGGCGTTGTTTGCTTCAACGGAGTCATCACGGGCCTGCATCTCTCCGACTTGGACCTCTCGGGACCAATCGACGTCGACGCCCTTGCGGAGATTCGCGGCCTCAGAACTCTCAGCTTCATCAACAACTCCTTCTCGGGACCAATCCCGGCGTTCAACAAACTGGGCTCAATCAAGTCCCTCCTTTTAACCCAAAACAATTTCTCCGGACCAATCCCAAACGACTTTTTCACCCCGTTGAACTCCCTCAAGAAACTCTGGCTCTCCGGCAACCGCTTCAACGGCACCATCCCCCAATCCCTAACCCAGCTCGACCTCCTCAAAGAACTCCACCTCGAGTACAACTCCTTCTCGGGCTTGATCCCTAACTTCAGCCAACGGCTAAAATCGCTGGACCTCTCCTTCAACAAACTCGAAGGGCCCATTCCCGAGAGTCTGGCGACGTTCACCGTGGACTCGTTCGTAGAAAACAAAGGTCTGTGCGGTAAGCCGTTGGTGAAGACGTGCGAGGTTTCCGACACGTCGTACTCGATGGCGAGCAGCGTGGGAGAGGAGGAGTACGGGAGCGGGTGGGGGAGGAAGGTGATCGTGGTGCTGGTGGTGGCGTCGGTGGCGGCGTTGTTATTTCTGCTTTTGACGCGGAAGCGGCGGGTGGAGTTCACGGCGGTGAGCAGGAACAGCAACGCGGAGGAGGCTGTGGAGGTGCAGGTGGCGAGCGTGAGGGGGAGCGTGGGTGAGAGGAGGGAGAACAAGAGGGGGGACATAGTGATGGTGAACGAGATGAGGGGGGTGTTTGGGCTGCAGGACATGATGAAGGCGGCAGCGGAGGTGCTGGGGAACGGTGGGCTGGGATCGGCGTACAAGGCGGCGATGACGAACGGACTGTGCGTGGTGGTGAAGAGGATGAGGGAGGTGAATAAGATAGGGAAGGAGGTGTTCGACGCCGAGATGAGGCAGTTCGGCAGGATACGACACCGTAACATCATCACTCCCCTGGCTTACCACTACAGGAGGGAGGAGAAGCTCCTGATCACCGAGTACATGCCGAAAGGAAGCTTGTTCTATGTATTGCATGGTGATAGAGGTCTATCACATTCTGAATTGACATGGCCAATTCGTTTGAGGATTGTGAAGGGAATAGCAAGAGGGTTGGGATTTCTTTACACTGAATTTTCCACGTACGATTTGCCTCACGGGAACCTTAAATCTAGCAATGTTCTCCTAAGTGATGAGTATGAGCCTCTTTTGAGTGACTATGCATTTCAGCCACTGGTGAACCCGAATGTTGCAGTGCAGGCATTGTTTGCATTCAAAACCCCAGACTTTGTGCAAAACCAAAAAGTTTCACAGAAGACAGATGTTTACTGCCTCGGAATCATCATTCTTGAAGTTATCACCGGGAAGTTCCCTGCCCAGTATCACAGCAATGGCAAGGGTGGTACTGATGTTGTGCAATGGGCTCATTCTGCTGTTTCCGAAGGAATGGAAGTAGAGTTGATCGATCCAGAGTTGTCATCAAACGACACAAATTCACGCAATCAGATGCTAAAACTTCTCCGTATTGGTGTTGCTTGCACTGAAAATAACTCTGATGAAAGACCAAAGATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACAGGTTTAA 1821 0.5277 MAAVRFHNHLLLLFFHLFFTLSSSTETQSLLRLKQSLVNGDRSLSSWIPNVSPCSGTWLGVVCFNGVITGLHLSDLDLSGPIDVDALAEIRGLRTLSFINNSFSGPIPAFNKLGSIKSLLLTQNNFSGPIPNDFFTPLNSLKKLWLSGNRFNGTIPQSLTQLDLLKELHLEYNSFSGLIPNFSQRLKSLDLSFNKLEGPIPESLATFTVDSFVENKGLCGKPLVKTCEVSDTSYSMASSVGEEEYGSGWGRKVIVVLVVASVAALLFLLLTRKRRVEFTAVSRNSNAEEAVEVQVASVRGSVGERRENKRGDIVMVNEMRGVFGLQDMMKAAAEVLGNGGLGSAYKAAMTNGLCVVVKRMREVNKIGKEVFDAEMRQFGRIRHRNIITPLAYHYRREEKLLITEYMPKGSLFYVLHGDRGLSHSELTWPIRLRIVKGIARGLGFLYTEFSTYDLPHGNLKSSNVLLSDEYEPLLSDYAFQPLVNPNVAVQALFAFKTPDFVQNQKVSQKTDVYCLGIIILEVITGKFPAQYHSNGKGGTDVVQWAHSAVSEGMEVELIDPELSSNDTNSRNQMLKLLRIGVACTENNSDERPKMKEAIRRIEEVQV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium219g00006 606 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 84 179 - -
Vium219g00006 606 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Vium219g00006 606 Gene3D Transferase(Phosphotransferase) domain 1 406 606 - -
Vium219g00006 606 ProSiteProfiles Protein kinase domain profile. 330 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium219g00006 606 Gene3D Phosphorylase Kinase; domain 1 300 405 - -
Vium219g00006 606 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 605 IPR046959 -
Vium219g00006 606 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vium219g00006 606 Gene3D Ribonuclease Inhibitor 183 230 IPR032675 -
Vium219g00006 606 Pfam Protein kinase domain 334 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium219g00006 606 SUPERFAMILY Protein kinase-like (PK-like) 334 601 IPR011009 -
Vium219g00006 606 SUPERFAMILY L domain-like 28 206 - -
Vium219g00006 606 Pfam Leucine Rich Repeat 185 204 IPR001611 GO:0005515
Vium219g00006 606 Coils Coil 594 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium219g00006 Vium-Chr219 83897 86107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium219g00006 1 604 Receptor kinase-like Gene Family AT3G42880 49.452 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium219g00006 Pkinase 2.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium219g00006 - - gmx:100790660 865.529