Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium219g00005 ATGGCTTTAGCAGTTTCCTCCACTGCATTGTCAATATTTTTCTTTGGATGCAGAGAAATACGTCAAAAGGTTAATTTGGCCGAAAGAACAGGGACATGGTTGGGTTTGAGCAGAAGAACAGCTGCAAATGCAACAAAAGGAGTGTCAGCTGTGTGTGAGCCACTTCCTCCAGATAGACCATTGTGGTTCCCTGGTAGTTCACCTCCTGAGTGGCTCGATGGCAGTCTTCCCGGTGATTTCGGTTTTGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTAAAGTGGTTCGCTCAAGCGGAACTAGTGCATGGAAGATGGGCGATGCTTGCAGTGTTTGGAATTCTGGTTCCGGAGTTGCTGGAAAGACTTGGTTACGTTGACAACTTCAACTGGTACGATGCTGGAGCGCGAGAGTACTTCACAGACCACACAACGCTGTTCGTGGCGCAAATGGGCCTGATGGGCTGGGTGGAGGGTCGAAGATGGGCCGACATGCTTAACCCAGGATGCGTTGACATTGAGCCCAAAGTGCCTCACATTACGAACCCGAAGCCCGATGTCGGGTACCCGGGTGGGCTGTGGTTTGACCCGATGGACTGGGGTCGTGGGTCACCTGAACCAGTGATGGTGTTGAGGACGAAGGAGATAAAGAATGGAAGACTTGCAATGCTGGCATTTGTAGGGTTCTGGTTTCAAGCTATTTACGTTGGAGCTGATCCCATTGAAAATTTGATGGCTCACCTTGCTGACCCTGGCCACTGCAACGTTTTCTCGGCTTTCACGCGGTAA 792 0.5063 MALAVSSTALSIFFFGCREIRQKVNLAERTGTWLGLSRRTAANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELVHGRWAMLAVFGILVPELLERLGYVDNFNWYDAGAREYFTDHTTLFVAQMGLMGWVEGRRWADMLNPGCVDIEPKVPHITNPKPDVGYPGGLWFDPMDWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYVGADPIENLMAHLADPGHCNVFSAFTR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium219g00005 263 FunFam Chlorophyll a-b binding protein, chloroplastic 69 254 - -
Vium219g00005 263 SUPERFAMILY Chlorophyll a-b binding protein 58 261 - -
Vium219g00005 263 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 38 262 IPR001344 GO:0009765|GO:0016020
Vium219g00005 263 Pfam Chlorophyll A-B binding protein 68 234 IPR022796 -
Vium219g00005 263 Gene3D Chlorophyll a/b binding protein domain 69 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium219g00005 Vium-Chr219 81177 82455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium219g00005 57 262 Chloroplast and Mitochondria Gene Families AT3G61470 65.534 4.33e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium219g00005 K08908 - gmx:100812066 477.633