Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium219g00003 ATGTCCAGCTCGTCGGAGTACTCTGAATTTTCCGGCCAGAAATCGGCCAAGTCGCCGGAGAAGTCAAGCTTCTCTCAAACTTGCAGTCTGTTGAGTCAATACATCAAGGAGAAGGGTAGCTTTGGAGATCTCACCCTCGGTATGACATGCAACGCTGAACCATGTGGGTCACCTGAGACTTCTTGTCAATCTGCTACAACTATGAACTTGTTTCCTACCAAGGAAAACAACGTTACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCACAAGCTTCCTATCGTCCTTCAGAGGAGATTCCAACCTTGATTAATTCCAGTGCAATTAAGTCTGTGAGCAAGGTTGCTAAGACTGCTCAGATGACAATCTTTTATGGAGGACAAGTTGTTGTGTTTGATGATTTTCCTGCTGATAAAGCAAATGAGATCATGTCCTATGCTAGAGGGAAGCCACAGAGCCAGAACAATTCTGTTTTCACTTACACACAGAGCCAACCTTCATTTCCTCCTAATTTGGTCAGAACTTCTGCTGATTCAAGTGCTCCAATTATTCCCACTGTGACTATTACCAACTCCATCCTTGAACACTCTCAACCATCATCCAGGCCTGTTGTTTGTGATCCACCAATTGCTAGAAAAGCTTCACTCCACCGGTTTCTTTTGAAGAGAAAGGATAGAATTGCTTCCAAAGCTCCATATCAAGTACCGAACGGGCCATCAGCTGAGTCCTTGCCATGGCTTGGGTTGAATGCTACTTCACCTAAAATCTGA 774 0.4457 MSSSSEYSEFSGQKSAKSPEKSSFSQTCSLLSQYIKEKGSFGDLTLGMTCNAEPCGSPETSCQSATTMNLFPTKENNVTPKNLTAMDLLSPQASYRPSEEIPTLINSSAIKSVSKVAKTAQMTIFYGGQVVVFDDFPADKANEIMSYARGKPQSQNNSVFTYTQSQPSFPPNLVRTSADSSAPIIPTVTITNSILEHSQPSSRPVVCDPPIARKASLHRFLLKRKDRIASKAPYQVPNGPSAESLPWLGLNATSPKI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium219g00003 257 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Vium219g00003 257 Pfam Jas motif 210 235 IPR018467 -
Vium219g00003 257 MobiDBLite consensus disorder prediction 1 22 - -
Vium219g00003 257 SMART tify_2 115 150 IPR010399 -
Vium219g00003 257 MobiDBLite consensus disorder prediction 232 257 - -
Vium219g00003 257 Pfam tify domain 118 148 IPR010399 -
Vium219g00003 257 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 240 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium219g00003 Vium-Chr219 35843 38267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium219g00003 1 252 Tify Gene Family AT1G19180 40.727 2.49e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium219g00003 tify 6.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium219g00003 K13464 - gmx:100801449 414.075