Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2198g00001 ATGGACTTGGCCGCGAAGCTTCACCACTTAGACCTCACCGGCGCGGTCATCTTGGATGCACGAAAGCCCACCGTGCTACGCCACCTTCCCCCACGCGTCACCACCAGAGCGAACACCAACAACACTAACATCAGCACCAATCTAATTTACACCAACCGCTTCTCGAGCCCATTGCGGCCCAATTCCGCTTCCTCTTCGGGCCTGACAACTGTAACAGTCGACGAAGATATCGAGTCTCTCTTCTCCGAAACCTCCTCGGAGGAGCCGCGGCGCAGAGGGAAGCAGCAGAGTAGCGGCGCGTCGGGCGTGTCGTCGGGGGTGAAGCTTGAAAACGTGGGGAAGGCGTACAAGGGCGTGACAGTGTTGAAGGACGTGAGTTGGGAGGTGAAGAAGGGGGAGAAGGTGGGTTTGGTTGGCGTGAACGGAGCGGGCAAGACGACGCAGATGAGGATTATCGCGGGATTGGAGGAGCCGGATTATGGGAACGTCATAAAGGCTAAGCCGAACATGAAAATCGCGTTTCTGAATCAGGAGTTCGAGGTGTCGCTGAGCAGGACAGTGAGGGAGGAGTTCATGAGCGCGTTCAAGGAGGAAATGGAGGTGGCGGGGAAATTGGAGAGGGTCCAGAAGGCGCTCGAGGGTGCTGTCAACGATTTGGAATTGATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGCGGAGGGCTCAGTCTGTGGACCTCGATGAGGTTGACGCGAAAATAAATAAGTTGGTGCCTGAACTTGGCTTTTCTCCCGAGGATTCTGATAGGTTGGTTGCGTCTTTCAGTGGAGGCTGGCAGATGAGAATGTGTCTTGGAAAGATTCTACTCCAGGAGCCTGATTTATTGCTGTTAGATGAGCCCACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAGGAGTATCTTAACCAGCAGGATGTGCCAATGGTTATCATTTCCCATGACCGAGCTTTCCTTGATCAACTGTGTACAAAAATTGTGGAAACTGACATGGGTGTGTCCAGGACGTTTGAGGGAAATTATTCGCAGTATGTAATTTCAAAAGCAGCATGGATTGAAGCACAGTATGCTGCTTGGGAGAAGCAGCAGAAAGAAATTGAGCATACAAGAGACTTGATAGGTAGATTAAGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGGGAAGAAGCTGGAGAGACTCCAGGAAGAGGAACTGGTGGAGAAGCCATTTGAACGCAAACAGATGAAAATCAGGTTCCCTGAGCGCGGAAAGAGTGGAAGATCTGTTGTAACAATTAGGAACTTGGAATTTGGCTTTGAGGATAAGCCACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCGATTATTGGTCCAAATGGTTGTGGCAAGAGTTCTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTTGGGGAGCATAATGTGTTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCGCTTGATCTAGACAAGACAGTGCTTGAGACAGTAGAGGAAGAAGCAGAGGACTGGAGGATTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATATGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAGTTCATGGTTAAACCATCAACTCTGCTTGTGTTGGATGAACCCACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAGTGAATACGAGGGCACCGTTATCACAGTATCTCATGACAGATACTTCATAAAGCAAATAGTTAACAGGGTCATAGAAATTAAAGATGGCACTATACAGGATTATGCAGGTGATTACGATTATTATTTAGAGAAGAATCTCGATGCTATGGAAAGAGAAATTGAACGTGAGGCAGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCGAAATCCAAGATGTCGAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAAATGCAGGCGTTTCAGGCCGCAAAACAGAAGTCTAAAGGTGTGAAAAATTCGAAGAGATGGAATTGA 2106 0.4725 MDLAAKLHHLDLTGAVILDARKPTVLRHLPPRVTTRANTNNTNISTNLIYTNRFSSPLRPNSASSSGLTTVTVDEDIESLFSETSSEEPRRRGKQQSSGASGVSSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDYGNVIKAKPNMKIAFLNQEFEVSLSRTVREEFMSAFKEEMEVAGKLERVQKALEGAVNDLELMGRLLDEFDLLQRRAQSVDLDEVDAKINKLVPELGFSPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEHTRDLIGRLSAGANSGRASSAGKKLERLQEEELVEKPFERKQMKIRFPERGKSGRSVVTIRNLEFGFEDKPLFKKANLTIERGEKIAIIGPNGCGKSSLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVEEEAEDWRIDDIKGLLGRCNFKYDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYEGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYDYYLEKNLDAMEREIEREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNSKRWN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2198g00001 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 342 IPR027417 -
Vium2198g00001 701 Gene3D - 104 389 IPR027417 -
Vium2198g00001 701 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524|GO:0016887
Vium2198g00001 701 CDD ABCF_EF-3 434 626 - -
Vium2198g00001 701 CDD ABCF_EF-3 108 337 - -
Vium2198g00001 701 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 106 692 - -
Vium2198g00001 701 Pfam ABC transporter 336 423 IPR032781 -
Vium2198g00001 701 Pfam ABC transporter 122 297 IPR003439 GO:0005524
Vium2198g00001 701 FunFam ABC transporter ATP-binding protein 394 664 - -
Vium2198g00001 701 Coils Coil 661 690 - -
Vium2198g00001 701 ProSitePatterns ABC transporters family signature. 269 283 IPR017871 GO:0005524|GO:0016887
Vium2198g00001 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 434 649 IPR003439 GO:0005524
Vium2198g00001 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 641 IPR027417 -
Vium2198g00001 701 MobiDBLite consensus disorder prediction 653 681 - -
Vium2198g00001 701 SMART AAA_5 458 626 IPR003593 GO:0016887
Vium2198g00001 701 SMART AAA_5 131 346 IPR003593 GO:0016887
Vium2198g00001 701 MobiDBLite consensus disorder prediction 653 701 - -
Vium2198g00001 701 MobiDBLite consensus disorder prediction 81 105 - -
Vium2198g00001 701 Gene3D - 397 662 IPR027417 -
Vium2198g00001 701 FunFam Putative ABC transporter ATP-binding component 106 392 - -
Vium2198g00001 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 107 365 IPR003439 GO:0005524
Vium2198g00001 701 Pfam ABC transporter 450 581 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2198g00001 Vium-Chr2198 14645 19898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2198g00001 431 645 Calmodulin-binding Proteins AT2G36910 25.210 1.12e-13 73.2