Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2195g00011 ATGAACTACAACGTTGTTCATTTCCTCATGCATCCTCTTCTCCTCAAACCCGTTTTTCTTAACGTCTTATCTGCCTCCCTCCACGGTCTCTTGTTGCTATCAGCTTTGCTGTCATGGCTTTGGAACAAAATGACATTCACTCCAGGAACCAGAGAAGAAGGCTCTATCGAGGAAGAGCAATTCAACGAGAGTGAGACCCTCTTCAAAACGACCGTGTTTTGTTCCCTTGGTGTTTCAGCTTTCAGTTTCGTTCTCTGTTTCCTCAATTACTTCTACTGGTATGCAAGTGGGTGGTCAGAACAAAAATCTATGACCCTTTTGGATTTGTCTCTCAAAACACTTGCTTGGGGTGTTGTTTCCCTTTCCTTGCACAAAGGGTACTTCTTTTTTGGTTCTGGTGAAATAAGGTTCAGGTTTTCATTCATCTTCAGAGTTTGGTGCACCTTGTATCTAGTTTTTTCTTGTTATTCTTTCGTGGTGGATATTGTTAATGTGACCGAGACACCAACTCAGTCATTGGTTTATGATGTTGTGTCCAACTGTGCGGGCTTTTTGTTTGGTTACGTCGGGTACTTTGTGAAAAAAAATGGTCATGTCAACGGTATTGAGGAGCCTCTTTTGAATGATGATGCAAAAGAGACCCAGGATGCGGACAATGTTACTCCTTACTCACATGCTGGAGTTTTTAGCATTCTCACTTTCTCTTGGGTGGGTTCTCTTGTGGCTGCTGGCTACAAGAAGACCTTGGACCTTGAGGATGTTCCTCAGCTAGACATCAGAAACAGTGTGGCTGGTGCTTTTCCTAGTTTCAGAGATAAACTTGAGGCTGATTATGGTGCAAATGCTATTAACAGTCTCACCACGTTTAAGCTGGCGAAGAGTTTAGTAATGTCAGCTTGGAAGGAAATTCTGTTCACAGCTTTTCTTGCATTGTTAGGCACCGTGGCTTCTTATGTTGGTCCTTACCTTATTGATGATTTTGTTCAGTACCTTGATGGACAACGACAAAACCAGGGTTATATTTTGGTTTCTGCCTTTTTCTTTGCAAAAATTGTGGAGTCACTGCTTGTTGCGATGATCTACAATAAGGTTCTCACACTTTCTTGTCAATCAAAGCAGGGCCAGACATCTGGGGAAATAATCAATCTCATGACTGTTGATGCTGAAAGAATTGGTGTCTTCAGTTGGTACATGCATGATTTGTGGATGGTGGCGCTGCAAGTCTCATTGGCCTTGTTGATTTTGTATAAAAGCCTTGGCATTGCTTCCTTTGCTACTCTCGTTACAACCATTGTTGTTATGTTGGCAAATGTTCCCTTGGGGTCATTGCAAGAGAAGTTTCAAAATAAGTTAATGGAGTCAAAAGATATTAGAATGAAGGCCACATCCGAGATTTTGAGGAACATGAGGATCCTCAAACTACAAGGTTGGGAAATGAAGTTTCTATCAAAAATAACTGAGCTCAGGAAAACCGAGGAAGGCTGGTTAAAAAGCTTTGTTTATACCTCAGCCATGACCACATTTGTGTTTTGGGGTGCACCCACATTTATATCTGTCGTTACTTTCGGCACTTGTATGTTTTTAGGGATACCCCTTGAAGCAGGGAAGATGTTATCTGCACTTGCAACATTCCGGATTCTTCAAGAAGTCATTTTTAGCCTTCCTGATACAATTTCTATGATAGCACAAACTAAAGTTTCTCTTGATAGGATTTCATCATTCCTTCGGCTTGATGACTTGCCGTGTGATGTTGTGGAGAAGCTTCCTCAGGGAAGTTCTAATACAGCAATTGAAGTAATTGATGGAAACTTCTCTTGGGATTTATCTTCCCCTAACCCGACATTGAAAAATATAAACTTTAAAGTTTTTTTTGGGATGAGGGTTGCTGTTTGTGGTGCTATTGGATCAGGAAAATCTAGTTTACTTTCTTGCGTATTGGGAGAAGTACCTAAGATATCAGGCAATCTTATGGTTTGCGGAACAAAGGCTTATGTTGCTCAGTCTCCATGGATACAAAGCGGCACCATAGAGCATAATATTTTGTTTGGTAAACACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCTTGTTCCCTGAAGAAGGACCTGGAGATTTTTTCTTTTGGTGATCAGACAATTATAGGAGAACGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATTCAAATTGCACGTGCTCTGTACCAAGATGCTGATATATATATATTTGATGATCCTTTTAGTGCTGTGGATGCTCACACAGGCTCTCACCTGTTTAAGGAATGCTTGCTGGGTCATTTATGTTCAAAAACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCCGCTGACCTTATATTGGTCATGAAAGATGGGAGAATTACTCAATCTGGAAAGTATACTGATCTGCTTAAAAGTGGAAGTGATTTTATGGAACTTGTTGGTGCGCACAAAAAAGCTCTATCCACTCTAGATTCATTGGATGGAGTGACAACATCTAATGAAATAAGTAGCTTAAAACAAGAAGAAAATGTCTCTGGCACACATGATTTTAAAGAAAAAAAAGCAAGCAAAGATGTGCAAAATGAGGAAACACACAACAAAAGTGAACCACAAGGTCAGCTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAACTATATCACAACCGCATATGGTGGAGCTATGGTACCTTTCATATTGTTGGCTCAGATTCTTTTTCAAGCTCTTCAAATAGGAAGTAATTATTGGATGGCTTGGGCCACTCCCATCTCAACACATGTGCAACCACGTGTTGAAGAAATGACTCTTATAGGAGTCTATGTTGGTTTTGCCATTGGAAGTTCTTTCTGTGTCCTTGTCAGAGCAATGCTTCTAGTCACAACAGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTCTGCATTTTCCGTGCTCCAATGTCATTTTTTGATTCCACTCCAAGTGGTCGAGTACTTAGCAGAGCTTCAACTGACCAAAGTGCAGTGGATACAGTCATTCCTTATCAAATGGCCTCACTTGCCTTCTCTGTGATCCAGCTTCTGGGAATTATAACAGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTTATACCTGTAATAGCAGTCGGCATATGGTATCAGCAATACTATGTACCATCAGCTCGAGAACTATCACGTTTAATTGGAGTCTGCAAAGCCCCAGTCATTCAACACTTGGCTGAGACAATTTCTGGTACTTCAACCATCAGAAGCTATGACCAGCAATCAAGATTTAGAGAGACAAATATGAAACTCACTGATGGGTATACTCGGCCAAAGTTCAGTGTTAGTGGTGCCATAGAATGGTTGCGCTTCCGCTTAGATATGCTGTCTGCAATCACCTTTGCCTTTTCCTTGTTAGTCTTAATATCTATTCCACCGGGAATCATAGATCCAGGCATTGCTGGTTTAGTTGTCACATATGGACTTAATTTGAACACGATACAAGCTTGGGTGATGTGGAATTTGTGCTACATAGAGAACAAAATTATATCAGTAGAAAGAATGCTTCAATATACGTGTATTCCTAGTGAGCCTCCCCTTGTTGTAGAAGAAGATCGACCCAACCCTACTTGGCCATCATATGGCGAGGTTGATATACAAGATTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGAATAACGTGTAAGTTTGGTGGAGGATTAAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCCACCCTTATTCAAACACTTTTCAGAATTGTTGAGCCTACCTGTGGTCAGATCATGATTGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAAACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGAACTGTGAGAAATAATCTAGACCCTCTGGAAGAGTACACTGATGAACAAATTTGGGAGGCCCTAGATAAGTGCCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGGAAGCTGGACTCCACAGTCACAGAGAATGGTGAAAATTGGAGTATGGGTCAGAGGCAGTTGGTATGCCTTGGCAGGGTGCTTCTGAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCGTCAGTAGATACAGCTACAGATAATTTGATTCAGCAGACTCTTAGGCAACATTTCTCTAACTCTACAGTCATTACCATTGCACATAGAATAACTTCTGTTATTGACAGTGACATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACACCCCAACAACTTTGCTGGAGAACAAGTCCTCCTCTTTTGCACAACTTGTTGCAGAGTATACCATGCGGTCCAACACCAATTTTGAGAAATCCATGGATCATTGA 4434 0.4091 MNYNVVHFLMHPLLLKPVFLNVLSASLHGLLLLSALLSWLWNKMTFTPGTREEGSIEEEQFNESETLFKTTVFCSLGVSAFSFVLCFLNYFYWYASGWSEQKSMTLLDLSLKTLAWGVVSLSLHKGYFFFGSGEIRFRFSFIFRVWCTLYLVFSCYSFVVDIVNVTETPTQSLVYDVVSNCAGFLFGYVGYFVKKNGHVNGIEEPLLNDDAKETQDADNVTPYSHAGVFSILTFSWVGSLVAAGYKKTLDLEDVPQLDIRNSVAGAFPSFRDKLEADYGANAINSLTTFKLAKSLVMSAWKEILFTAFLALLGTVASYVGPYLIDDFVQYLDGQRQNQGYILVSAFFFAKIVESLLVAMIYNKVLTLSCQSKQGQTSGEIINLMTVDAERIGVFSWYMHDLWMVALQVSLALLILYKSLGIASFATLVTTIVVMLANVPLGSLQEKFQNKLMESKDIRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEEGWLKSFVYTSAMTTFVFWGAPTFISVVTFGTCMFLGIPLEAGKMLSALATFRILQEVIFSLPDTISMIAQTKVSLDRISSFLRLDDLPCDVVEKLPQGSSNTAIEVIDGNFSWDLSSPNPTLKNINFKVFFGMRVAVCGAIGSGKSSLLSCVLGEVPKISGNLMVCGTKAYVAQSPWIQSGTIEHNILFGKHMDRERYEKVLEACSLKKDLEIFSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYIFDDPFSAVDAHTGSHLFKECLLGHLCSKTVVYVTHQVEFLPAADLILVMKDGRITQSGKYTDLLKSGSDFMELVGAHKKALSTLDSLDGVTTSNEISSLKQEENVSGTHDFKEKKASKDVQNEETHNKSEPQGQLVQEEEREKGKVGFSVYWNYITTAYGGAMVPFILLAQILFQALQIGSNYWMAWATPISTHVQPRVEEMTLIGVYVGFAIGSSFCVLVRAMLLVTTGYKTATILFNKMHFCIFRAPMSFFDSTPSGRVLSRASTDQSAVDTVIPYQMASLAFSVIQLLGIITVMSQVAWQVFIVFIPVIAVGIWYQQYYVPSARELSRLIGVCKAPVIQHLAETISGTSTIRSYDQQSRFRETNMKLTDGYTRPKFSVSGAIEWLRFRLDMLSAITFAFSLLVLISIPPGIIDPGIAGLVVTYGLNLNTIQAWVMWNLCYIENKIISVERMLQYTCIPSEPPLVVEEDRPNPTWPSYGEVDIQDLQVRYAPHLPLVLRGITCKFGGGLKTGIVGRTGSGKSTLIQTLFRIVEPTCGQIMIDNINISSIGLHDLRSKLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSNSTVITIAHRITSVIDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTMRSNTNFEKSMDH 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2195g00011 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 223 1464 - -
Vium2195g00011 1477 SUPERFAMILY ABC transporter transmembrane region 909 1209 IPR036640 GO:0005524|GO:0016020
Vium2195g00011 1477 FunFam ABC transporter C family member 10 352 579 - -
Vium2195g00011 1477 CDD ABCC_MRP_domain2 1225 1445 - -
Vium2195g00011 1477 Gene3D - 1210 1463 IPR027417 -
Vium2195g00011 1477 MobiDBLite consensus disorder prediction 849 870 - -
Vium2195g00011 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1217 1458 IPR027417 -
Vium2195g00011 1477 Pfam ABC transporter transmembrane region 911 1150 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00011 1477 Pfam ABC transporter transmembrane region 352 532 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00011 1477 Gene3D ABC transporter type 1, transmembrane domain 281 579 IPR036640 GO:0005524|GO:0016020
Vium2195g00011 1477 Gene3D ABC transporter type 1, transmembrane domain 870 1208 IPR036640 GO:0005524|GO:0016020
Vium2195g00011 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 820 IPR003439 GO:0005524
Vium2195g00011 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 910 1190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00011 1477 MobiDBLite consensus disorder prediction 843 884 - -
Vium2195g00011 1477 CDD ABC_6TM_ABCC_D1 305 571 IPR044746 GO:0140359
Vium2195g00011 1477 FunFam ABC transporter C family member 5 871 1208 - -
Vium2195g00011 1477 Pfam ABC transporter 1245 1392 IPR003439 GO:0005524
Vium2195g00011 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 819 IPR027417 -
Vium2195g00011 1477 SMART AAA_5 624 797 IPR003593 GO:0016887
Vium2195g00011 1477 SMART AAA_5 1253 1446 IPR003593 GO:0016887
Vium2195g00011 1477 FunFam ABC transporter C family member 3 1210 1462 - -
Vium2195g00011 1477 CDD ABCC_MRP_domain1 597 797 - -
Vium2195g00011 1477 SUPERFAMILY ABC transporter transmembrane region 295 583 IPR036640 GO:0005524|GO:0016020
Vium2195g00011 1477 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Vium2195g00011 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1227 1461 IPR003439 GO:0005524
Vium2195g00011 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 303 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00011 1477 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
Vium2195g00011 1477 CDD ABC_6TM_ABCC_D2 908 1202 IPR044726 GO:0140359
Vium2195g00011 1477 Gene3D - 583 834 IPR027417 -
Vium2195g00011 1477 FunFam ABC transporter C family member 5 582 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2195g00011 Vium-Chr2195 83477 89466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2195g00011 597 850 Calmodulin-binding Proteins AT2G36910 27.536 8.65e-22 101