Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2195g00010 ATGAACTACAACGTTGTTCATTTCCTCATGCATCCTCTTCTCCTCAAACCCGTTTTTCTTAACGTCTTATCTGCCTCCCTCCACGGTCTCTTGTTGCTATCAGCTTTGCTGTCATGGCTTTGGAACAAAATGACATTCACTCCAGGAACCAGAGAAGAAGGCTCTATCGAGGAAGAGCAATTCAACGAGAGTGAGACCCTCTTCAAAACGACCGTGTTTTGTTCCCTTGGTGTTTCAGCTTTCAGTTTCGTTCTCTGTTTCCTCAATTACTTCTACTGGTATGCAAGTGGGTGGTCAGAACAAAAATCTATGACCCTTTTGGATTTGTCTCTCAAAACACTTGCTTGGGGTGTTGTTTCCCTTTCCTTGCACAAAGGGTACTTCTTTTTTGGTTCTGGTGAAATAAGGTTCAGGTTTTCATTCATCTTCAGAGTTTGGTGCACCTTGTATCTAGTTTTTTCTTGTTATTCTTTCGTGGTGGATATTGTTAATGTGACCGAGACACCAACTCAGTCATTGGTTTATGATGTTGTGTCCAACTGTGCGGGCTTTTTGTTTGGTTACGTCGGGTACTTTGTGAAAAAAAATGGTCATGTCAACGGTATTGAGGAGCCTCTTTTGAATGATGATGCAAAAGAGACCCAGGATGCGGACAATGTTACTCCTTACTCACATGCTGGAGTTTTTAGCATTCTCACTTTCTCTTGGGTGGGTTCTCTTGTGGCTGCTGGCTACAAGAAGACCTTGGACCTTGAGGATGTTCCTCAGCTAGACATCAGAAACAGTGTGGCTGGTGCTTTTCCTAGTTTCAGAGATAAACTTGAGGCTGATTATGGTGCAAATGCTATTAACAGTCTCACCACGTTTAAGCTGGCGAAGAGTTTAGTAATGTCAGCTTGGAAGGAAATTCTGTTCACAGCTTTTCTTGCATTGTTAGGCACCGTGGCTTCTTATGTTGGTCCTTACCTTATTGATGATTTTGTTCAGTACCTTGATGGACAACGACAAAACCAGGGTTATATTTTGGTTTCTGCCTTTTTCTTTGCAAAAATTGTGGAGTGCCTCTCTAAAAGGCAATTATATTTTAGGTTTCAGCAGATTGGACTTCGAATTCGAGCACTGCTTGTTGCGATGATCTACAATAAGGTTCTCACACTTTCTTGTCAATCAAAGCAGGGCCAGACATCTGGGGAAATAATCAATCTCATGACTGTTGATGCTGAAAGAATTGGTGTCTTCAGTTGGTACATGCATGATTTGTGGATGGTGGCGCTGCAAGTCTCATTGGCCTTGTTGATTTTGTATAAAAGCCTTGGCATTGCTTCCTTTGCTACTCTCGTTACAACCATTGTTGTTATGTTGGCAAATGTTCCCTTGGGGTCATTGCAAGAGAAGTTTCAAAATAAGTTAATGGAGTCAAAAGATATTAGAATGAAGGCCACATCCGAGATTTTGAGGAACATGAGGATCCTCAAACTACAAGGTTGGGAAATGAAGTTTCTATCAAAAATAACTGAGCTCAGGAAAACCGAGGAAGGCTGGTTAAAAAGCTTTGTTTATACCTCAGCCATGACCACATTTGTGTTTTGGGGTGCACCCACATTTATATCTGTCGTTACTTTCGGCACTTGTATGTTTTTAGGGATACCCCTTGAAGCAGGGAAGATGTTATCTGCACTTGCAACATTCCGGATTCTTCAAGAAGTCATTTTTAGCCTTCCTGATACAATTTCTATGATAGCACAAACTAAAGTTTCTCTTGATAGGATTTCATCATTCCTTCGGCTTGATGACTTGCCGTGTGATGTTGTGGAGAAGCTTCCTCAGGGAAGTTCTAATACAGCAATTGAAGTAATTGATGGAAACTTCTCTTGGGATTTATCTTCCCCTAACCCGACATTGAAAAATATAAACTTTAAAGTTTTTTTTGGGATGAGGGTTGCTGTTTGTGGTGCTATTGGATCAGGAAAATCTAGTTTACTTTCTTGCGTATTGGGAGAAGTACCTAAGATATCAGGCAATCTTATGGTTTGCGGAACAAAGGCTTATGTTGCTCAGTCTCCATGGATACAAAGCGGCACCATAGAGCATAATATTTTGTTTGGTAAACACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCTTGTTCCCTGAAGAAGGACCTGGAGATTTTTTCTTTTGGTGATCAGACAATTATAGGAGAACGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATTCAAATTGCACGTGCTCTGTACCAAGATGCTGATATATATATATTTGATGATCCTTTTAGTGCTGTGGATGCTCACACAGGCTCTCACCTGTTTAAGGAATGCTTGCTGGGTCATTTATGTTCAAAAACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCCGCTGACCTTATATTGGTCATGAAAGATGGGAGAATTACTCAATCTGGAAAGTATACTGATCTGCTTAAAAGTGGAAGTGATTTTATGGAACTTGTTGGTGCGCACAAAAAAGCTCTATCCACTCTAGATTCATTGGATGGAGTGACAACATCTAATGAAATAAGTAGCTTAAAACAAGAAGAAAATGTCTCTGGCACACATGATTTTAAAGAAAAAAAAGCAAGCAAAGATGTGCAAAATGAGGAAACACACAACAAAAGTGAACCACAAGGTCAGCTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAACTATATCACAACCGCATATGGTGGAGCTATGGTACCTTTCATATTGTTGGCTCAGATTCTTTTTCAAGCTCTTCAAATAGGAAGTAATTATTGGATGGCTTGGGCCACTCCCATCTCAACACATGTGCAACCACGTGTTGAAGAAATGACTCTTATAGGAGTCTATGTTGGTTTTGCCATTGGAAGTTCTTTCTGTGTCCTTGTCAGAGCAATGCTTCTAGTCACAACAGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTCTGCATTTTCCGTGCTCCAATGTCATTTTTTGATTCCACTCCAAGTGGTCGAGTACTTAGCAGAGCTTCAACTGACCAAAGTGCAGTGGATACAGTCATTCCTTATCAAATGGCCTCACTTGCCTTCTCTGTGATCCAGCTTCTGGGAATTATAACAGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTTATACCTGTAATAGCAGTCGGCATATGGTATCAGCAATACTATGTACCATCAGCTCGAGAACTATCACGTTTAATTGGAGTCTGCAAAGCCCCAGTCATTCAACACTTGGCTGAGACAATTTCTGGTACTTCAACCATCAGAAGCTATGACCAGCAATCAAGATTTAGAGAGACAAATATGAAACTCACTGATGGGTATACTCGGCCAAAGTTCAGTGTTAGTGGTGCCATAGAATGGTTGCGCTTCCGCTTAGATATGCTGTCTGCAATCACCTTTGCCTTTTCCTTGTTAGTCTTAATATCTATTCCACCGGGAATCATAGATCCAGGCATTGCTGGTTTAGTTGTCACATATGGACTTAATTTGAACACGATACAAGCTTGGGTGATGTGGAATTTGTGCTACATAGAGAACAAAATTATATCAGTAGAAAGAATGCTTCAATATACGTGTATTCCTAGTGAGCCTCCCCTTGTTGTAGAAGAAGATCGACCCAACCCTACTTGGCCATCATATGGCGAGGTTGATATACAAGATTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGAATAACGTGTAAGTTTGGTGGAGGATTAAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCCACCCTTATTCAAACACTTTTCAGAATTGTTGAGCCTACCTGTGGTCAGATCATGATTGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAAACTAAATGAACAAATTTGGGAGGCCCTAGATAAGTGCCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGGAAGCTGGACTCCACAGTCACAGAGAATGGTGAAAATTGGAGTATGGGTCAGAGGCAGTTGGTATGCCTTGGCAGGGTGCTTCTGAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCGTCAGTAGATACAGCTACAGATAATTTGATTCAGCAGACTCTTAGGCAACATTTCTCTAACTCTACAGTCATTACCATTGCACATAGAATAACTTCTGTTATTGACAGTGACATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACACCCCAACAACTTTGCTGGAGAACAAGTCCTCCTCTTTTGCACAACTTGTTGCAGAGTATACCATGCGGTCCAACACCAATTTTGAGAAATCCATGGATCATTGA 4416 0.4087 MNYNVVHFLMHPLLLKPVFLNVLSASLHGLLLLSALLSWLWNKMTFTPGTREEGSIEEEQFNESETLFKTTVFCSLGVSAFSFVLCFLNYFYWYASGWSEQKSMTLLDLSLKTLAWGVVSLSLHKGYFFFGSGEIRFRFSFIFRVWCTLYLVFSCYSFVVDIVNVTETPTQSLVYDVVSNCAGFLFGYVGYFVKKNGHVNGIEEPLLNDDAKETQDADNVTPYSHAGVFSILTFSWVGSLVAAGYKKTLDLEDVPQLDIRNSVAGAFPSFRDKLEADYGANAINSLTTFKLAKSLVMSAWKEILFTAFLALLGTVASYVGPYLIDDFVQYLDGQRQNQGYILVSAFFFAKIVECLSKRQLYFRFQQIGLRIRALLVAMIYNKVLTLSCQSKQGQTSGEIINLMTVDAERIGVFSWYMHDLWMVALQVSLALLILYKSLGIASFATLVTTIVVMLANVPLGSLQEKFQNKLMESKDIRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEEGWLKSFVYTSAMTTFVFWGAPTFISVVTFGTCMFLGIPLEAGKMLSALATFRILQEVIFSLPDTISMIAQTKVSLDRISSFLRLDDLPCDVVEKLPQGSSNTAIEVIDGNFSWDLSSPNPTLKNINFKVFFGMRVAVCGAIGSGKSSLLSCVLGEVPKISGNLMVCGTKAYVAQSPWIQSGTIEHNILFGKHMDRERYEKVLEACSLKKDLEIFSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYIFDDPFSAVDAHTGSHLFKECLLGHLCSKTVVYVTHQVEFLPAADLILVMKDGRITQSGKYTDLLKSGSDFMELVGAHKKALSTLDSLDGVTTSNEISSLKQEENVSGTHDFKEKKASKDVQNEETHNKSEPQGQLVQEEEREKGKVGFSVYWNYITTAYGGAMVPFILLAQILFQALQIGSNYWMAWATPISTHVQPRVEEMTLIGVYVGFAIGSSFCVLVRAMLLVTTGYKTATILFNKMHFCIFRAPMSFFDSTPSGRVLSRASTDQSAVDTVIPYQMASLAFSVIQLLGIITVMSQVAWQVFIVFIPVIAVGIWYQQYYVPSARELSRLIGVCKAPVIQHLAETISGTSTIRSYDQQSRFRETNMKLTDGYTRPKFSVSGAIEWLRFRLDMLSAITFAFSLLVLISIPPGIIDPGIAGLVVTYGLNLNTIQAWVMWNLCYIENKIISVERMLQYTCIPSEPPLVVEEDRPNPTWPSYGEVDIQDLQVRYAPHLPLVLRGITCKFGGGLKTGIVGRTGSGKSTLIQTLFRIVEPTCGQIMIDNINISSIGLHDLRSKLNEQIWEALDKCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSNSTVITIAHRITSVIDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTMRSNTNFEKSMDH 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2195g00010 1471 MobiDBLite consensus disorder prediction 862 903 - -
Vium2195g00010 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1236 1452 IPR027417 -
Vium2195g00010 1471 SMART AAA_5 643 816 IPR003593 GO:0016887
Vium2195g00010 1471 SMART AAA_5 1272 1440 IPR003593 GO:0016887
Vium2195g00010 1471 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Vium2195g00010 1471 Pfam ABC transporter transmembrane region 930 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00010 1471 Pfam ABC transporter transmembrane region 304 551 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00010 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 838 IPR027417 -
Vium2195g00010 1471 FunFam ABC transporter C family member 5 601 848 - -
Vium2195g00010 1471 CDD ABCC_MRP_domain1 616 816 - -
Vium2195g00010 1471 FunFam ABC transporter C family member 10 287 598 - -
Vium2195g00010 1471 CDD ABCC_MRP_domain2 1244 1439 - -
Vium2195g00010 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1246 1455 IPR003439 GO:0005524
Vium2195g00010 1471 Pfam ABC transporter 634 768 IPR003439 GO:0005524
Vium2195g00010 1471 FunFam AGAP012735-PA 1337 1459 - -
Vium2195g00010 1471 Pfam ABC transporter 1264 1386 IPR003439 GO:0005524
Vium2195g00010 1471 Gene3D ABC transporter type 1, transmembrane domain 281 598 IPR036640 GO:0005524|GO:0016020
Vium2195g00010 1471 Gene3D ABC transporter type 1, transmembrane domain 889 1227 IPR036640 GO:0005524|GO:0016020
Vium2195g00010 1471 SUPERFAMILY ABC transporter transmembrane region 928 1228 IPR036640 GO:0005524|GO:0016020
Vium2195g00010 1471 CDD ABC_6TM_ABCC_D1 305 590 IPR044746 GO:0140359
Vium2195g00010 1471 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 223 1458 - -
Vium2195g00010 1471 Gene3D - 602 853 IPR027417 -
Vium2195g00010 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 582 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00010 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 616 839 IPR003439 GO:0005524
Vium2195g00010 1471 CDD ABC_6TM_ABCC_D2 927 1221 IPR044726 GO:0140359
Vium2195g00010 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 929 1209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium2195g00010 1471 SUPERFAMILY ABC transporter transmembrane region 295 602 IPR036640 GO:0005524|GO:0016020
Vium2195g00010 1471 MobiDBLite consensus disorder prediction 868 889 - -
Vium2195g00010 1471 Gene3D - 1323 1457 IPR027417 -
Vium2195g00010 1471 Gene3D - 1229 1322 IPR027417 -
Vium2195g00010 1471 FunFam ABC transporter C family member 5 890 1227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2195g00010 Vium-Chr2195 83477 89466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2195g00010 616 869 Calmodulin-binding Proteins AT2G36910 27.536 8.75e-22 101