Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2194g00009 ATGGAGGAGATGTCAACCACGGTTGCAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATTACTACTCACATGGATGTGTCCAGAATTAAGCTGATGACAGAGGCAGGGTTGTTATCCAATTCTATAACCAAGGTTTCTACTGATACTTTTATTGCTGATGAGGATCTGGACAGTAATTGTCTTGGGGAGGAAGTTGGTAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGATGTTGGGTATGGTGTCCCAAAATATAAACTCTTTGGTTGTCGGTGAAGAAGTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCGCTAGAAGGTGATCCAATTATTGATAGTTCTCTTTCAGTAGCCAGCGAGAATAGTAGTTTTTGTGGAGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGAACAAGAAGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAATTGCTGCCAGGGCTACTGATTTGGGTGTGTCAAATGTAGTCGCAGATGTAGCAGTTAGCGTTGGAGAAGAGACAGGAGTTATATCTGTCCCAGAGCCTACTACAGGTGTTCTTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTGGAAAAAGACCTGAGATGGAAGATGCACTTGCAACTGTACCTAGATTTTTGAAAATTCCTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGACCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCTGTCAGAGAAGGTCTTTTAGTTGAAAGCACCAGGGATGATTGTCGAGATCTGTGGAAAAAAGCCTTCACCAGTTGCTTTTTAAAGGTTGATTCTGAAGTTGGAGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACTGCTGTTGTTGCTGTTATATGTTCATCTCATATTGTAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCCCTATCAGTTGACCATAAACCAAATCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGAGTTTTTGGTGTTCTCGCAATGTCAAGGTCAATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCTGAGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGGCCAGTGACGGCCTGTGGGATGTCATGACAAACGAAGANGACCTT 1428 0.4307 MEEMSTTVAVPLRVGNSVCDKPTITTHMDVSRIKLMTEAGLLSNSITKVSTDTFIADEDLDSNCLGEEVGSAAVTPPEKGRVEEIPMLGMVSQNINSLVVGEEVLTPEIEDDDLISLEGDPIIDSSLSVASENSSFCGDEFIGSEISADLGTRSSIEIEKSINTVKIAARATDLGVSNVVADVAVSVGEETGVISVPEPTTGVLHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTRDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIVVSNCGDSRAVLCRGKEPMALSVDHKPNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEXDL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2194g00009 476 ProSiteProfiles PPM-type phosphatase domain profile. 229 476 IPR001932 -
Vium2194g00009 476 SUPERFAMILY PP2C-like 225 473 IPR036457 -
Vium2194g00009 476 PANTHER PROTEIN PHOSPHATASE 177 473 IPR015655 GO:0004722|GO:0006470
Vium2194g00009 476 Gene3D - 216 474 IPR036457 -
Vium2194g00009 476 ProSitePatterns PPM-type phosphatase domain signature. 280 288 IPR000222 GO:0043169
Vium2194g00009 476 SMART PP2C_4 219 476 IPR001932 -
Vium2194g00009 476 Pfam Protein phosphatase 2C 259 473 IPR001932 -
Vium2194g00009 476 CDD PP2Cc 231 473 IPR001932 -
Vium2194g00009 476 FunFam Protein phosphatase 2C 50 227 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2194g00009 Vium-Chr2194 63232 67392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2194g00009 1 473 PP2C-type Phosphatase Gene Family AT1G17550 44.330 8.65e-123 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2194g00009 K14497 - gmx:102662702 789.645