Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2194g00008 ATGGAGGAGATGTCAACCACGGTTGCAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATTACTACTCACATGGATGTGTCCAGAATTAAGCTGATGACAGAGGCAGGGTTGTTATCCAATTCTATAACCAAGGTTTCTACTGATACTTTTATTGCTGATGAGGATCTGGACAGTAATTGTCTTGGGGAGGAAGTTGGTAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGATGTTGGGTATGGTGTCCCAAAATATAAACTCTTTGGTTGTCGGTGAAGAAGTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCTCTAGAAGGTGATCCAATTATTGATAGTTCTCTTTCAGTAGCCAGCGAGAATAGTAGTTTTTGTGGAGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGAACAAGAAGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAATTGCTGCCAGGGCTACTGATTTGGGTGTGTCAAATGTAGTCGCAGATGTAGCAGTTAGCGTTGGAGAAGAGACAGGAGTTATATCTGTCCCAGAGCCTACTACAGGTGTTCTTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTGGAAAAAGACCTGAGATGGAAGATGCACTTGCAACTGTACCTAGATTTTTGAAAATTCCTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGACCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCTGTCAGAGAAGGTCTTTTAGTTGAAAGCACCAGGGATGATTGTCGAGATCTGTGGAAAAAAGCCTTCACCAGTTGCTTTTTAAAGGTTGATTCTGAAGTTGGAGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACTGCTGTTGTTGCTGTTATATGTTCATCTCATATTGTAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCCCTATCAGTTGACCATAAACCAAATCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGAGTTTTTGGTGTTCTCGCAATGTCAAGGTCAATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCTGAGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGGCCAGTGACGGCCTGTGGGATGTCATGACAAACGAAGAGGTGTGCGACATTGCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGGCTGCCACTGCCCTCAGAACGGGGAGAAGGAATTGATCCTGCTGCACAAGCAGCTGCAGAGTACCTCTCAAATCGCGCCCTTCAGAAAGGAAGCAAAGACAACATCTCTGTGATTGTGGTGGATTTGAAAGCTCAGAGAAAATTTAAGAGCAAGACGTGA 1632 0.4393 MEEMSTTVAVPLRVGNSVCDKPTITTHMDVSRIKLMTEAGLLSNSITKVSTDTFIADEDLDSNCLGEEVGSAAVTPPEKGRVEEIPMLGMVSQNINSLVVGEEVLTPEIEDDDLISLEGDPIIDSSLSVASENSSFCGDEFIGSEISADLGTRSSIEIEKSINTVKIAARATDLGVSNVVADVAVSVGEETGVISVPEPTTGVLHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTRDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIVVSNCGDSRAVLCRGKEPMALSVDHKPNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2194g00008 543 PANTHER PROTEIN PHOSPHATASE 179 533 IPR015655 GO:0004722|GO:0006470
Vium2194g00008 543 FunFam Protein phosphatase 2C 16 217 543 - -
Vium2194g00008 543 Gene3D - 216 543 IPR036457 -
Vium2194g00008 543 CDD PP2Cc 231 533 IPR001932 -
Vium2194g00008 543 Pfam Protein phosphatase 2C 259 526 IPR001932 -
Vium2194g00008 543 ProSiteProfiles PPM-type phosphatase domain profile. 229 533 IPR001932 -
Vium2194g00008 543 ProSitePatterns PPM-type phosphatase domain signature. 280 288 IPR000222 GO:0043169
Vium2194g00008 543 SMART PP2C_4 219 531 IPR001932 -
Vium2194g00008 543 SUPERFAMILY PP2C-like 225 534 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2194g00008 Vium-Chr2194 58194 62226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2194g00008 1 543 PP2C-type Phosphatase Gene Family AT1G17550 48.022 8.61e-161 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2194g00008 K14497 - gmx:102662702 921.768