Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2194g00002 ATGGTAGCCGTCGACAAGGACAAGAACAGTGCCCACGCTTTCCGTTGGGCCGTTAATCATCTTGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCATGTCACCAATGTGTTTCCACCCGACGAAGACGATGTAGTCAATATTTTCAATTCCTTACGCGGAATCTGTACTCGCAAAGCTGTCATGATGAAAGAAGCCGTAATTGATGATGCGGATGTTGTGAGAGGACTTCTAGAGTTTGCTAACAGGAATCTCATACATAGTATCGTGGTCGGTGCATCTGCCAAAAACACTTTGTCAAGTCTCAAAAAACTTAAAGCCTATCAGTATCAGGATATACCAACAGCCATGATCAAATCAGCTCCGGATTTCTGCTCTGTTTACATAATTTCGAAATTGAAGATTATGTCTGCTCGATCAGCGGTACGGTCATTGTCAAAAAGTTTAACTACACCGAAACCAGTTCCTGTGCCGCCAAGTCCGCCCAGTCCAGGAGAAGGACCATTAAGGGGACAACTACCTAGAAGTAGGGGCACTTACGAAGTAGCAGCAGAACCAATGAGAATAATACAGGCTAGAGAAAGACCAAAGAGTACGGGAAATGTTATATCAATAGACCACATTGAAATACCCCCTCGTCCACGAAATTGGTCAATGGATGAAAAAGAAATTTCATGGCTTGGGGTGGATTTCAATAGAATTGACTCTGGTATATCAGAATCCATCCCCGTGACATATTCTCCTCAATCCGCAAAAGAACTAGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCTGCCAAAAACCAGGCGGAACAGATTCGTCAATGGAAACTGGAAGAGGATCGCAAGGTTGAGGTAGTTAGGATGTCTCAAGAGGCCGCTCTTGCAATTGCAGAAAAGGAAAAGGCTATAGCCAAAGCTGCAATGGAAGCAGCTGAGGAGGCTAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGGAGAAGGCCAGGGCAGAGGCAGAAGAGAAAGAACGAGCATTATCTACGTTGGCTCAAAATGATACCCGGTATAGAAGATACACCATAGAGGAGATTGAAATGGCCACAGAAAAGTTCTCCCCGTCAAACAAAATTGGTGAAGGAGGATACGGACCTGTGTATAAAGGCCACCTTGATCACACCCCCGTTGCAATCAAAATTTTAAGGCCTGATGCCGCTCAGGGCATGAAGCAGTTCAACCAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCGGAGCATGGATGCTTAGTGTATGAGTACCTGGATAACGGTAGCTTAGAAGACAGACTGTTCCGGAAAAACAACAGCAAACCAATTCCATGGAATAAACGGTTCGAAATATCTGCTGAGATAGCAACTGCACTCCTTTTCCTCCACCAAAACAAGCCAGATCCCATCGTGCACCGAGACCTCAAACCATCTAACATTCTCGTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCACGTTTAGTCCCTCCTTCAGTAGCTAATTCTGTGACACAATCTTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCCGAGTATCAACAATCGGGGATTCTAACAACAAAGTCAGATATATATTCTCTGGGGATAATGCTACTTCAGATAATCACAGGCAAGCCTCCCATGGGTCTTGCTCACCTAGTTAGGAAGGCAGTTGAAAAGGGCAGGTTTGAAGAAGTGCTGGACCCTGTGATCACAGATTGGCCGGTGGAAGAGGCTCTGTCATATGCCAAATTAGCATTGCAGTGTGCCCAACTCAGCAAGAAGGACAGACCAATTCTTGCAACGGAGATTTTGCCTGAGCTTAACAGGTTAAGCAGACTTGAATTGCCTCCTCAGAATGATCAATTTTCTTCAAGCAGTGATGATAATCTATAG 2034 0.4508 MVAVDKDKNSAHAFRWAVNHLDNPVIIAVHVKHKNFSHHVTNVFPPDEDDVVNIFNSLRGICTRKAVMMKEAVIDDADVVRGLLEFANRNLIHSIVVGASAKNTLSSLKKLKAYQYQDIPTAMIKSAPDFCSVYIISKLKIMSARSAVRSLSKSLTTPKPVPVPPSPPSPGEGPLRGQLPRSRGTYEVAAEPMRIIQARERPKSTGNVISIDHIEIPPRPRNWSMDEKEISWLGVDFNRIDSGISESIPVTYSPQSAKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLEEDRKVEVVRMSQEAALAIAEKEKAIAKAAMEAAEEARRRAEQEAQRRKDAEEKARAEAEEKERALSTLAQNDTRYRRYTIEEIEMATEKFSPSNKIGEGGYGPVYKGHLDHTPVAIKILRPDAAQGMKQFNQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYLDNGSLEDRLFRKNNSKPIPWNKRFEISAEIATALLFLHQNKPDPIVHRDLKPSNILVDRNYVSKISDVGLARLVPPSVANSVTQSYMTSAAGTFCYIDPEYQQSGILTTKSDIYSLGIMLLQIITGKPPMGLAHLVRKAVEKGRFEEVLDPVITDWPVEEALSYAKLALQCAQLSKKDRPILATEILPELNRLSRLELPPQNDQFSSSSDDNL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2194g00002 677 SUPERFAMILY Protein kinase-like (PK-like) 372 651 IPR011009 -
Vium2194g00002 677 Coils Coil 317 372 - -
Vium2194g00002 677 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 363 463 - -
Vium2194g00002 677 Pfam Protein kinase domain 394 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2194g00002 677 ProSiteProfiles Protein kinase domain profile. 391 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2194g00002 677 CDD STKc_IRAK 397 657 - -
Vium2194g00002 677 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 107 - -
Vium2194g00002 677 Pfam Universal stress protein family 1 107 IPR006016 -
Vium2194g00002 677 Gene3D Transferase(Phosphotransferase) domain 1 464 672 - -
Vium2194g00002 677 PANTHER OS02G0152300 PROTEIN 2 662 - -
Vium2194g00002 677 Gene3D HUPs 1 116 IPR014729 -
Vium2194g00002 677 Gene3D Phosphorylase Kinase; domain 1 360 463 - -
Vium2194g00002 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Vium2194g00002 677 FunFam Os07g0541700 protein 464 555 - -
Vium2194g00002 677 MobiDBLite consensus disorder prediction 153 180 - -
Vium2194g00002 677 MobiDBLite consensus disorder prediction 337 365 - -
Vium2194g00002 677 SMART serkin_6 391 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2194g00002 677 MobiDBLite consensus disorder prediction 158 174 - -
Vium2194g00002 677 CDD STK_N 2 138 - -
Vium2194g00002 677 Coils Coil 257 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2194g00002 Vium-Chr2194 24121 27783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2194g00002 69 660 Receptor kinase-like Gene Family AT5G12000 56.250 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium2194g00002 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2194g00002 - - gmx:100798861 979.548