Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2193g00022 ATGGGGTTTGGGAATAATGCAATTCAAGCAGGGAGTTTGGATGTGGGGAAGTCAAAGGTAAAGATGCAAAAGGCTGGTGCAGACAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATACTTCCATAAGTGGCACTAGTGCTAACAGTGTGGAAAAAACATCTGCATATGAGAAAAACAAGAAGGAAACAAATGCTCTTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACCCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCCACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGATGTGTTTTCAAGGGTTGGATCGAAGAAAATGGTACTGCACCTGTGAAACCTGGTACCGGGCTTACTGTAGCTGTGAAAACTCTCAACCATGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTCGTCCATCCGAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTCTATGAATGCATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTTCTTTTCTCCATGAAGAAGCTCAGCGACCTGTAATATATCGTGATTTTAAGACATCTAATATTCTGTTGGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACACTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTACTGCTGGAAATGCTGACCGGCCGGCGATCCATCGATAAGAACAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTGCTTGGCGACAGGAGGATGTTACTACGGATCATAGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGGCACAGAAGGCTGCACAGCTGGCTGCTCAATGCCTTTGCCGTGATCCAAAATCCAGACCTATGATGAGTGATGTAGTTCATGCTCTGAAGCATTTGCAAAACCTCAAGGATATGGCCATCTCAACTTATCATTTCCAAGTTGCACGAGTGGATCGAACCATGTCCATGCCAACTTCTAAAAATGGTATGCAAGCACAGTTAACAATAACAAGGAAGGGTCAAGCTGCAAGGTCCTTGTCAAGTCCAAAAGGCCCTCATGGTTCTCCTTATCATCATTATATCAAGTCTCCAAAACCAAATGGATAA 1428 0.4398 MGFGNNAIQAGSLDVGKSKVKMQKAGADKEIGCCVKFCFIGSCIPSRSKVDTSISGTSANSVEKTSAYEKNKKETNALPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSDVVHALKHLQNLKDMAISTYHFQVARVDRTMSMPTSKNGMQAQLTITRKGQAARSLSSPKGPHGSPYHHYIKSPKPNG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2193g00022 475 MobiDBLite consensus disorder prediction 444 475 - -
Vium2193g00022 475 PANTHER OS01G0588500 PROTEIN-RELATED 77 407 - -
Vium2193g00022 475 FunFam Serine/threonine-protein kinase BIK1 89 207 - -
Vium2193g00022 475 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
Vium2193g00022 475 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2193g00022 475 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Vium2193g00022 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Vium2193g00022 475 MobiDBLite consensus disorder prediction 75 95 - -
Vium2193g00022 475 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Vium2193g00022 475 MobiDBLite consensus disorder prediction 61 95 - -
Vium2193g00022 475 CDD STKc_IRAK 128 406 - -
Vium2193g00022 475 Gene3D Transferase(Phosphotransferase) domain 1 208 426 - -
Vium2193g00022 475 FunFam Probable serine/threonine-protein kinase PBL8 208 423 - -
Vium2193g00022 475 ProSiteProfiles Protein kinase domain profile. 122 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2193g00022 Vium-Chr2193 137232 141556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2193g00022 80 419 Glycoside Hydrolase AT3G07070 51.989 1.39e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium2193g00022 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2193g00022 - - vum:124829441 926.776