Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2193g00021 ATGCAAAAGGCTGGTGCAGACAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATACTTCCATAAGTGGCACTAGTGCTAACAGTGTGGAAAAAACATCTGCATATGAGAAAAACAAGAAGGAAACAAATGCTCTTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACCCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCCACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGATGTGTTTTCAAGGGTTGGATCGAAGAAAATGGTACTGCACCTGTGAAACCTGGTACCGGGCTTACTGTAGCTGTGAAAACTCTCAACCATGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTCGTCCATCCGAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTCTATGAATGCATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTTCTTTTCTCCATGAAGAAGCTCAGCGACCTGTAATATATCGTGATTTTAAGACATCTAATATTCTGTTGGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACACTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTACTGCTGGAAATGCTGACCGGCCGGCGATCCATCGATAAGAACAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTGCTTGGCGACAGGAGGATGTTACTACGGATCATAGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGGCACAGAAGGCTGCACAGCTGGCTGCTCAATGCCTTTGCCGTGATCCAAAATCCAGACCTATGATGAGTGATGTAGTTCATGCTCTGAAGCATTTGCAAAACCTCAAGGATATGGCCATCTCAACTTATCATTTCCAAGTTGCACGAGTGGATCGAACCATGTCCATGCCAACTTCTAAAAATGGTATGCAAGCACAGTTAACAATAACAAGGAAGGGTCAAGCTGCAAGGTCCTTGTCAAGTCCAAAAGGCCCTCATGGTTCTCCTTATCATCATTATATCAAGTCTCCAAAACCAAATGGATAA 1365 0.4396 MQKAGADKEIGCCVKFCFIGSCIPSRSKVDTSISGTSANSVEKTSAYEKNKKETNALPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSDVVHALKHLQNLKDMAISTYHFQVARVDRTMSMPTSKNGMQAQLTITRKGQAARSLSSPKGPHGSPYHHYIKSPKPNG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2193g00021 454 FunFam Serine/threonine-protein kinase BIK1 68 186 - -
Vium2193g00021 454 SUPERFAMILY Protein kinase-like (PK-like) 75 382 IPR011009 -
Vium2193g00021 454 PANTHER OS01G0588500 PROTEIN-RELATED 56 386 - -
Vium2193g00021 454 Gene3D Transferase(Phosphotransferase) domain 1 187 405 - -
Vium2193g00021 454 ProSitePatterns Protein kinases ATP-binding region signature. 107 139 IPR017441 GO:0005524
Vium2193g00021 454 ProSiteProfiles Protein kinase domain profile. 101 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2193g00021 454 MobiDBLite consensus disorder prediction 423 454 - -
Vium2193g00021 454 MobiDBLite consensus disorder prediction 54 73 - -
Vium2193g00021 454 Pfam Protein kinase domain 104 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2193g00021 454 CDD STKc_IRAK 107 385 - -
Vium2193g00021 454 Gene3D Phosphorylase Kinase; domain 1 73 186 - -
Vium2193g00021 454 MobiDBLite consensus disorder prediction 40 73 - -
Vium2193g00021 454 FunFam Probable serine/threonine-protein kinase PBL8 187 402 - -
Vium2193g00021 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2193g00021 Vium-Chr2193 137232 141556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2193g00021 59 398 Glycoside Hydrolase AT3G07070 51.989 6.33e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium2193g00021 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2193g00021 - - vum:124829441 908.286