Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2193g00020 ATGCAGTTTCCCATTGCCTCTCTCCTCCACCACCTACACCCCTTCTGGACTGATTTTCAGAACTGTGATGTTCTTCTTTTAGTTCTGTTGATTGTGACTGTGATCACGGTCGTGATCATCATATGGGTTGCAGAGTCTTCAATTATTGGAAGGAGTTTGGATGTGGGGAAGTCAAAGGTAAAGATGCAAAAGGCTGGTGCAGACAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATACTTCCATAAGTGGCACTAGTGCTAACAGTGTGGAAAAAACATCTGCATATGAGAAAAACAAGAAGGAAACAAATGCTCTTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACCCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCCACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGATGTGTTTTCAAGGGTTGGATCGAAGAAAATGGTACTGCACCTGTGAAACCTGGTACCGGGCTTACTGTAGCTGTGAAAACTCTCAACCATGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTCGTCCATCCGAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTCTATGAATGCATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTTCTTTTCTCCATGAAGAAGCTCAGCGACCTGTAATATATCGTGATTTTAAGACATCTAATATTCTGTTGGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACACTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTACTGCTGGAAATGCTGACCGGCCGGCGATCCATCGATAAGAACAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTGCTTGGCGACAGGAGGATGTTACTACGGATCATAGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGGCACAGAAGGCTGCACAGCTGGCTGCTCAATGCCTTTGCCGTGATCCAAAATCCAGACCTATGATGAGTGATGTAGTTCATGCTCTGAAGCATTTGCAAAACCTCAAGGATATGGCCATCTCAACTTATCATTTCCAAGTTGCACGAGTGGATCGAACCATGTCCATGCCAACTTCTAAAAATGGTATGCAAGCACAGTTAACAATAACAAGGAAGGGTCAAGCTGCAAGGTCCTTGTCAAGTCCAAAAGGCCCTCATGGTTCTCCTTATCATCATTATATCAAGTCTCCAAAACCAAATGGATAA 1548 0.4399 MQFPIASLLHHLHPFWTDFQNCDVLLLVLLIVTVITVVIIIWVAESSIIGRSLDVGKSKVKMQKAGADKEIGCCVKFCFIGSCIPSRSKVDTSISGTSANSVEKTSAYEKNKKETNALPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSDVVHALKHLQNLKDMAISTYHFQVARVDRTMSMPTSKNGMQAQLTITRKGQAARSLSSPKGPHGSPYHHYIKSPKPNG 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2193g00020 515 ProSiteProfiles Protein kinase domain profile. 162 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2193g00020 515 FunFam Probable serine/threonine-protein kinase PBL8 248 463 - -
Vium2193g00020 515 MobiDBLite consensus disorder prediction 115 135 - -
Vium2193g00020 515 Gene3D Phosphorylase Kinase; domain 1 142 247 - -
Vium2193g00020 515 ProSitePatterns Protein kinases ATP-binding region signature. 168 200 IPR017441 GO:0005524
Vium2193g00020 515 PANTHER OS01G0588500 PROTEIN-RELATED 117 447 - -
Vium2193g00020 515 CDD STKc_IRAK 168 446 - -
Vium2193g00020 515 Pfam Protein kinase domain 165 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2193g00020 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vium2193g00020 515 Gene3D Transferase(Phosphotransferase) domain 1 248 466 - -
Vium2193g00020 515 FunFam Serine/threonine-protein kinase BIK1 129 247 - -
Vium2193g00020 515 MobiDBLite consensus disorder prediction 484 515 - -
Vium2193g00020 515 SUPERFAMILY Protein kinase-like (PK-like) 136 443 IPR011009 -
Vium2193g00020 515 MobiDBLite consensus disorder prediction 105 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2193g00020 Vium-Chr2193 137232 141569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2193g00020 120 459 Glycoside Hydrolase AT3G07070 51.989 7.94e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium2193g00020 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2193g00020 - - vum:124829441 1006.51