Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2193g00016 ATGGCAGGAAGTTCATGCAAGGTTGCCTTTATCTTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGCTGGCATTGCCGCGTTCGACGAATTTCTCCAAGAACGAGCTGAAGAGGCCCATGAAATCGCTCTTAAATCCTACGTGCCTGACCCTACAAACGCTACTTCCCACCAAGATATTCACGATGACGAGGATTTTAAGAAGACGTCAAAGAAGGAATCAAACAGCACAAGGAGGGAGCTGAAGCAGAATGAGAAGAAGAAATACACTGGACCTTGCTTGGCCCTGAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAGGCTGGGCCAAAAACCGTTTTAAGTTAGCCAATTGCGTGAAGGGTTTTGGAAGAAGGGCCATCGGAGGAGCCAACGGAAAAATCTACACTGTCACTGATCCCTCCGACGATGATCCCGTTAACCCAAAACCAGGAACCCTACGCTACGCGGTTATACAAAAGGACCCACTGTGGATCATATTTTCACGAAGCATGGTCATCAAGCTGAATTACGAGTTGTTGATTTCTTCTGACAAAACCATCGACGGTCGCGGGTACAGCGTGGTGATCAAGGATGGCGCAGGCCTTACCATGCAGTTTGTGAACAACGTTATTATCCATGGGCTTAAAATACATAAGATCAAGTCCACGCCAGGTGGCATGATCAGGGACTCTTGGGACCATGTCGGAATAAGAACAAGGGCTGATGGGGATGCCATCTCCATTTTTGGCTCTTCAAACATTTGGATCGATCACATCTCACTCGCTGATTGCGAGGATGGTCTCGTCGACGTTATCCAGGGATCCACTGCAATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTGTTCGGAGCGAGCGACACCTTCTCCGGAGACAAGATAATGCAGGTGACAGTGGCATTCAACCATTTCGGGCAGGGACTGATCCAGAGGATGCCAAGGTGCAGATGGGGATTCTTCCACGTTCTTAACAACGATTACACTCACTGGCTGATGTATGCAATTGGTGGGAGCTCAGGGCCAACGATTCTGAGCCAAGGAAACCGGTTCATTGCACCAAACAACGACGCTGCGAAGATAGTGACGCACAGGGACTATGCACCATCTTCTGAGTGGGAGAAATGGCAATGGAGATCAGAAAACGATGTCTTCATGAATGGGGCTAAGTTTATTCAGTCAGGGAAACCTCTTGGTAAGCTTCCATTTAACAAAGGGTTTCTCATGAAACCTAGACATGGGTCACAAGCCAACAGGCTCACACGCTTTGCTGGATTCCTCAACTGCAAGGTGGGAAGACCTTGCTAG 1344 0.4829 MAGSSCKVAFILVAFAITIPCLEAGIAAFDEFLQERAEEAHEIALKSYVPDPTNATSHQDIHDDEDFKKTSKKESNSTRRELKQNEKKKYTGPCLALNPIDRCWRCKKGWAKNRFKLANCVKGFGRRAIGGANGKIYTVTDPSDDDPVNPKPGTLRYAVIQKDPLWIIFSRSMVIKLNYELLISSDKTIDGRGYSVVIKDGAGLTMQFVNNVIIHGLKIHKIKSTPGGMIRDSWDHVGIRTRADGDAISIFGSSNIWIDHISLADCEDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDTFSGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKIVTHRDYAPSSEWEKWQWRSENDVFMNGAKFIQSGKPLGKLPFNKGFLMKPRHGSQANRLTRFAGFLNCKVGRPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2193g00016 447 PANTHER PECTATE LYASE 18-RELATED 42 445 IPR045032 GO:0030570
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Vium2193g00016 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Vium2193g00016 447 Gene3D - 97 440 IPR012334 -
Vium2193g00016 447 SMART amb_all 172 369 IPR002022 -
Vium2193g00016 447 SUPERFAMILY Pectin lyase-like 85 441 IPR011050 -
Vium2193g00016 447 Pfam Pectate lyase 183 363 IPR002022 -
Vium2193g00016 447 Pfam Pectate lyase, N terminus 26 82 IPR007524 GO:0030570
Vium2193g00016 447 MobiDBLite consensus disorder prediction 57 84 - -
Vium2193g00016 447 MobiDBLite consensus disorder prediction 48 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2193g00016 Vium-Chr2193 99677 101627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2193g00016 15 447 Polysaccharide Lyase AT5G15110 56.114 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2193g00016 K01728 - gmx:100780236 726.087