Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2193g00015 ATGACGAAACATAACATTATAGAGGTGAGCCTTGGGAAGAGCCAAATGTCCATGGCAGAAGGTGAGCTTCAAGCTACACGGTGTGTCAAGAGACGAAGAAGAGAGGTTGCTGCAGCAGTTAGCAGTGGTGACGATAGCCACCACCAGCAGTTACCAAAGCAACACGGTGGTGAAAATTCTACAATCAACACAACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGACATAGGTGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCTTGGAATATAACACAGAAGAAAAAAGGGAAGCAAGTTTACCTTGGGGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGATTTAGCCGCACTTAAGTATTGGGGAACTTCAACCTTCACCAATTTTCCAATATCTGATTACGGGAAAGATATGGAAATAATGCAGACTATGACCAAAGAGGAGTATTTGGCAACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTGTCGAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTCGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTATCTTGGCACCTATGGCACCCAAGAGGAAGCTGCACGAGCTTATGACTTAGCGGCCATTGAGTACAGAGGGATCAATGCTGTGACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCAGGAGGAGGAAGCAGCCCAGAAGCAAAACTTGAAACACATGCAGTTCTAGAGGGTCAAAAGGTGGCATCCCCATCTAATTATTCTCTAACAGAAGAGTCAAAATCTTCAGTCATTCACAACAGTTTTTTCAGCCTAGATTCTCTGAATTCCCCAGTAGGGCAAGACAATTTTGGAAGCAAACCCTACCCATTCTCAAGCAGTAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCGTTGTTCAGAGAATTGGTTGAGAAGAATTCAAATGTATCTGGAGATGAAGCTGATGATGGGGAAGTCAGAAAAAGTGAACAGCCACAAATAGCTAGTGATGATGATCTGGGTGGAATCTTCTTTGATAGTATTGGTGATATCCCATTTGTTTGTGATCCCAATAGATACAACTTGGAATTGCAAGAAAGAGACCTGCACTCAATATTTTGA 1176 0.4303 MTKHNIIEVSLGKSQMSMAEGELQATRCVKRRRREVAAAVSSGDDSHHQQLPKQHGGENSTINTTKRSSKFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYGKDMEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDLAAIEYRGINAVTNFDLSTYIKWLKPGGGSSPEAKLETHAVLEGQKVASPSNYSLTEESKSSVIHNSFFSLDSLNSPVGQDNFGSKPYPFSSSKSSSPTALGLLLRSSLFRELVEKNSNVSGDEADDGEVRKSEQPQIASDDDLGGIFFDSIGDIPFVCDPNRYNLELQERDLHSIF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2193g00015 391 Pfam AP2 domain 69 128 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 Pfam AP2 domain 171 222 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 MobiDBLite consensus disorder prediction 333 358 - -
Vium2193g00015 391 MobiDBLite consensus disorder prediction 37 73 - -
Vium2193g00015 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 299 - -
Vium2193g00015 391 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677
Vium2193g00015 391 SMART rav1_2 172 236 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 SMART rav1_2 70 142 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 PRINTS Ethylene responsive element binding protein signature 212 232 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 MobiDBLite consensus disorder prediction 333 352 - -
Vium2193g00015 391 MobiDBLite consensus disorder prediction 43 69 - -
Vium2193g00015 391 SUPERFAMILY DNA-binding domain 69 138 IPR016177 GO:0003677
Vium2193g00015 391 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 FunFam AP2-like ethylene-responsive transcription factor 69 138 - -
Vium2193g00015 391 FunFam AP2-like ethylene-responsive transcription factor 171 232 - -
Vium2193g00015 391 CDD AP2 171 232 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 Gene3D AP2/ERF domain 171 232 IPR036955 GO:0003700|GO:0006355
Vium2193g00015 391 Gene3D AP2/ERF domain 69 138 IPR036955 GO:0003700|GO:0006355
Vium2193g00015 391 ProSiteProfiles AP2/ERF domain profile. 70 136 IPR001471 GO:0003700|GO:0006355
Vium2193g00015 391 CDD AP2 69 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2193g00015 Vium-Chr2193 94303 96339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2193g00015 66 273 AP2-EREBP Transcription Factor Family AT5G57390 60.094 7.84e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2193g00015 AP2 8.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2193g00015 - - gmx:100779867 647.121