Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2193g00008 ATGTCTAGCCCTAGTAATCCAGAGATAGAAGAGAAGAGAGTTACACAGGAAGATAAAGTAAAATCTGCTAAAACTGAGATGGGTGAGGTGAAGGAAGAAAATGAGAGATTGAAGAAGACGCTGGAAAGAGTAGAAAAGGATTACCAATCCCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGATGTTCCAAAGAAGGGTGTGGTTACTTCCCATGATGATCAGAGCGAAGAGCCTGAGTTTGTCTCACTTTGCCTTGGAAGGAGTCCAACGGAGCCTAAGAAGGAGGCAAGAATTGCAGACTTTGACAAACCGACAGAAGAAAATGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAACACTTGTTGGAGATGGAGATTGTGTCTGATTTGAGTCCGATGAACAGCTCAGAAGAACCAAAGGAAACGGAAAGGGAGGGAACACTGTCAACAAGTCAATCAGCAAAAGTGATAAATGTAAATACCGACATTTCAGATCAAATGCCAGCCAAGAGAGCAAGGGTATCTGTGAGAGCTAGATGTGATACTCCCACGATGAATGATGGGTGTCAGTGGAGGAAGTATGGACAGAAGATAGCAAAGGGAAATCCATGCCCGAGGGCATACTATCGTTGCACAGTTGCACCAACGTGCCCAGTTAGGAAACAGGTACAAAGGTGTTCCCAGGACCTGTCCATCTTAATCACAACCTATGAAGGAACCCATAACCACCCACTTCCTGTCTCAGCCACAGCCATGGCTTCAACCACTTCTGCTGCTGCATCCATGCTACTGTCAGGTTCTTCAACATCTTCAAGCCACATCTCAGCATCTTTTGGAAATGGTCTAAGTTTCAGTGACCAGTTTAGTGAATCAAGAGCCAAACAAATCTTCTCACCATCAAACCATGCCTCACCACACGTGTTCTCAACAATCACTCTAGACCTTACTTCTTCAGCTCCTTCCTCCTCATCAACTCAATTCCATCGTGGCTTAACTTCAACCATGGCTCCAGTTTCAAACCCAAGATCCTCAGCTAGTCTCAGCTTTTGTTCACCGGAGCATAACTTCATACCATCCATTTGGGGTAAGGGGTTCCACGATAATGCCACAACCACAACAGCAATTGACAAAGCCCCCACAAGGCCAATTACGCAGCCAAATAATTTCCAACAACATTTCTACCAACAATGCACAACAAACCAAACTCCTTCCAGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGATCCGAGTTTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGAACGTGGATCAAACGTTGATAAACAAGAGGTAACAGAATATGGTCTTGGTTCAGGGTTGAACTTAAAACTTGGGGAACATCTTCAATTGGCTTCGCCTAGTCCCTTGAACCAGAACGGGAAAGGATGCTTAACAGGCTACTTAAAAAGTTTGGCCTCTAAAACTTCCGAGGCTGGAAACTTCATTCTTCTCCAACCACCATTGCCATTTTCTTTCTCCAAGAATGTCACAAATCAGATCAACCGCTATGTTCCAGAAATGAACACGCATCACTAG 1584 0.4419 MSSPSNPEIEEKRVTQEDKVKSAKTEMGEVKEENERLKKTLERVEKDYQSLQLRFFDILHKDVPKKGVVTSHDDQSEEPEFVSLCLGRSPTEPKKEARIADFDKPTEENVGPNLTLGLDSKHLLEMEIVSDLSPMNSSEEPKETEREGTLSTSQSAKVINVNTDISDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCSQDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSSSHISASFGNGLSFSDQFSESRAKQIFSPSNHASPHVFSTITLDLTSSAPSSSSTQFHRGLTSTMAPVSNPRSSASLSFCSPEHNFIPSIWGKGFHDNATTTTAIDKAPTRPITQPNNFQQHFYQQCTTNQTPSREALAETITKAISTDPSFRSVIAAAVSSIVERGSNVDKQEVTEYGLGSGLNLKLGEHLQLASPSPLNQNGKGCLTGYLKSLASKTSEAGNFILLQPPLPFSFSKNVTNQINRYVPEMNTHH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2193g00008 527 Pfam WRKY DNA -binding domain 188 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2193g00008 527 Coils Coil 13 54 - -
Vium2193g00008 527 MobiDBLite consensus disorder prediction 1 31 - -
Vium2193g00008 527 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 439 IPR044810 GO:0003700
Vium2193g00008 527 MobiDBLite consensus disorder prediction 131 155 - -
Vium2193g00008 527 SUPERFAMILY WRKY DNA-binding domain 180 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2193g00008 527 ProSiteProfiles WRKY domain profile. 182 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2193g00008 527 FunFam probable WRKY transcription factor 31 172 249 - -
Vium2193g00008 527 MobiDBLite consensus disorder prediction 10 31 - -
Vium2193g00008 527 Gene3D WRKY domain 172 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2193g00008 527 SMART WRKY_cls 187 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2193g00008 Vium-Chr2193 37492 40349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2193g00008 27 518 WRKY Transcription Factor Family AT5G15130 41.852 9.40e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium2193g00008 WRKY 6.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2193g00008 - - gmx:100780402 734.947