Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2187g00003 ATGGAAAGCCCTCCTACTCCTTCTTACGTCGTGGTTGCATGTGATGCCACAAGGGACCGCACTGAAAACGAGATCAAACTCGTTGCTGATCATGTCCGGGCCAGGGGTTCCTTTCTCTCTCATGGTGACAAGCTGCTTGTGCTTTGTGTGTTGCACAAAGTGTCTCACCCCATGGGGTACCAGACATTAGCATGTCCCGAGTCATTTGCTGGAACCAACTTTCGTACAATGGAGGAAGAAGTCAAAAAGAAAGTTGATACGTATGCTAGTGAGCTTTTATCATGTTATGAAGATTTTGAAAGTGAAGGGGCTACTATTGAAATTAAAGTCACGGCAGGATTTCCAATTAAACAAGTTGTTTTACAGGAGATTACAAACTATAATGCATCGTGGATAATACTTGACAGGAGTTTTAACTTTGATGCAGGCATAAGCATTAAAGGAGAATATAGGTATCTCACCAGTTCTCAGATTGACCATAAGCCAAACCAAAGTGACTTTCTGCCAAAACATTCAGACGCACCGCTTCTTTGTACTGGCTGTGGGACAAGAACTGAGTTATCTATCTCAGACTCAATGAAGTTCAACTACTCTGACATACAACTTGCAACAAATGACTTTTCAAAGGACAACTTATTAGGTGAAGGTGGCTACGGTCACGTATACAAGGGCGTGCTTAAAGATGGACAGCAAATTGCGGCAAAGGTAAGGAAAGAAGAAAGTTCACAAGGATTTTCTGAATTTCATTCTGAGGTCTACGTCTTAAGTTTTGCGCGACACAAGAATATAGTGATGCTGTTGGGTTATTGTTGCAAAGAAAGGAAAAACATCCTCATTTATGAATATATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATAATGCAGCAGTTCTTGAGTGGCACCAGAGGTATGCTATTGCCATTGGGATTGCTAAGGGATTGCGTTTTCTACACGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGCGACCAAGCAATATACTTCTCACCCACGATATTGTTCCCATGCTAGGTGACTTTGGCCTTGCTAAATGGAAGACTGATAATGAAACTCCTCAAACAAGGATAATGGGCACATTAGGATACCTTGCTCCTGAGTATGCTGAAGACGGTATTGTTTCTGAGGGAACAGATGTGTACTCTTATGGGATTATCCTGTTACAATTGATATCAGGACGCCAGGTGGGCAATTCCAACAATCCAGAACAACAACAATCTCTCCGACAATGGGCTGAGCCAATGATAGAGAAGTTGGCGTTACATGAACTGATTGACACTCGTCTATCGGAATCATATGACACCTATGAACTGTACCTCATGGCCAAAGCAGCATACTTCTGTGTGCAAAGGAAGCCTGAGATGCGTCCCTCAATGGGAGAGGTTGTGCGACTTCTCGAGGGAGAAAGTAGCCACTTCCACTCTTTGGAAGATCAATTTGTACCTAATTTTAACGGCTAA 1491 0.4266 MESPPTPSYVVVACDATRDRTENEIKLVADHVRARGSFLSHGDKLLVLCVLHKVSHPMGYQTLACPESFAGTNFRTMEEEVKKKVDTYASELLSCYEDFESEGATIEIKVTAGFPIKQVVLQEITNYNASWIILDRSFNFDAGISIKGEYRYLTSSQIDHKPNQSDFLPKHSDAPLLCTGCGTRTELSISDSMKFNYSDIQLATNDFSKDNLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKERKNILIYEYICNKSLHWHLFENNAAVLEWHQRYAIAIGIAKGLRFLHEECRGGPIIHRDMRPSNILLTHDIVPMLGDFGLAKWKTDNETPQTRIMGTLGYLAPEYAEDGIVSEGTDVYSYGIILLQLISGRQVGNSNNPEQQQSLRQWAEPMIEKLALHELIDTRLSESYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEDQFVPNFNG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2187g00003 496 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 283 491 - -
Vium2187g00003 496 ProSitePatterns Protein kinases ATP-binding region signature. 213 235 IPR017441 GO:0005524
Vium2187g00003 496 SUPERFAMILY Protein kinase-like (PK-like) 192 476 IPR011009 -
Vium2187g00003 496 Gene3D Phosphorylase Kinase; domain 1 180 282 - -
Vium2187g00003 496 Gene3D Transferase(Phosphotransferase) domain 1 284 490 - -
Vium2187g00003 496 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 182 481 - -
Vium2187g00003 496 Pfam Protein kinase domain 208 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2187g00003 496 ProSiteProfiles Protein kinase domain profile. 207 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2187g00003 496 CDD STKc_IRAK 213 478 - -
Vium2187g00003 496 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 179 282 - -
Vium2187g00003 496 ProSitePatterns Tyrosine protein kinases specific active-site signature. 328 340 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2187g00003 Vium-Chr2187 25732 29828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2187g00003 195 477 Trihelix Transcription Factor Family AT5G38560 44.483 1.19e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium2187g00003 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2187g00003 - - vum:124829419 1012.68