LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2187g00003	ATGGAAAGCCCTCCTACTCCTTCTTACGTCGTGGTTGCATGTGATGCCACAAGGGACCGCACTGAAAACGAGATCAAACTCGTTGCTGATCATGTCCGGGCCAGGGGTTCCTTTCTCTCTCATGGTGACAAGCTGCTTGTGCTTTGTGTGTTGCACAAAGTGTCTCACCCCATGGGGTACCAGACATTAGCATGTCCCGAGTCATTTGCTGGAACCAACTTTCGTACAATGGAGGAAGAAGTCAAAAAGAAAGTTGATACGTATGCTAGTGAGCTTTTATCATGTTATGAAGATTTTGAAAGTGAAGGGGCTACTATTGAAATTAAAGTCACGGCAGGATTTCCAATTAAACAAGTTGTTTTACAGGAGATTACAAACTATAATGCATCGTGGATAATACTTGACAGGAGTTTTAACTTTGATGCAGGCATAAGCATTAAAGGAGAATATAGGTATCTCACCAGTTCTCAGATTGACCATAAGCCAAACCAAAGTGACTTTCTGCCAAAACATTCAGACGCACCGCTTCTTTGTACTGGCTGTGGGACAAGAACTGAGTTATCTATCTCAGACTCAATGAAGTTCAACTACTCTGACATACAACTTGCAACAAATGACTTTTCAAAGGACAACTTATTAGGTGAAGGTGGCTACGGTCACGTATACAAGGGCGTGCTTAAAGATGGACAGCAAATTGCGGCAAAGGTAAGGAAAGAAGAAAGTTCACAAGGATTTTCTGAATTTCATTCTGAGGTCTACGTCTTAAGTTTTGCGCGACACAAGAATATAGTGATGCTGTTGGGTTATTGTTGCAAAGAAAGGAAAAACATCCTCATTTATGAATATATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATAATGCAGCAGTTCTTGAGTGGCACCAGAGGTATGCTATTGCCATTGGGATTGCTAAGGGATTGCGTTTTCTACACGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGCGACCAAGCAATATACTTCTCACCCACGATATTGTTCCCATGCTAGGTGACTTTGGCCTTGCTAAATGGAAGACTGATAATGAAACTCCTCAAACAAGGATAATGGGCACATTAGGATACCTTGCTCCTGAGTATGCTGAAGACGGTATTGTTTCTGAGGGAACAGATGTGTACTCTTATGGGATTATCCTGTTACAATTGATATCAGGACGCCAGGTGGGCAATTCCAACAATCCAGAACAACAACAATCTCTCCGACAATGGGCTGAGCCAATGATAGAGAAGTTGGCGTTACATGAACTGATTGACACTCGTCTATCGGAATCATATGACACCTATGAACTGTACCTCATGGCCAAAGCAGCATACTTCTGTGTGCAAAGGAAGCCTGAGATGCGTCCCTCAATGGGAGAGGTTGTGCGACTTCTCGAGGGAGAAAGTAGCCACTTCCACTCTTTGGAAGATCAATTTGTACCTAATTTTAACGGCTAA	1491	0.4266	MESPPTPSYVVVACDATRDRTENEIKLVADHVRARGSFLSHGDKLLVLCVLHKVSHPMGYQTLACPESFAGTNFRTMEEEVKKKVDTYASELLSCYEDFESEGATIEIKVTAGFPIKQVVLQEITNYNASWIILDRSFNFDAGISIKGEYRYLTSSQIDHKPNQSDFLPKHSDAPLLCTGCGTRTELSISDSMKFNYSDIQLATNDFSKDNLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKERKNILIYEYICNKSLHWHLFENNAAVLEWHQRYAIAIGIAKGLRFLHEECRGGPIIHRDMRPSNILLTHDIVPMLGDFGLAKWKTDNETPQTRIMGTLGYLAPEYAEDGIVSEGTDVYSYGIILLQLISGRQVGNSNNPEQQQSLRQWAEPMIEKLALHELIDTRLSESYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEDQFVPNFNG	496

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium2187g00003	496	FunFam	Probable receptor-like serine/threonine-protein kinase At5g57670	283	491	-	-
Vium2187g00003	496	ProSitePatterns	Protein kinases ATP-binding region signature.	213	235	IPR017441	GO:0005524
Vium2187g00003	496	SUPERFAMILY	Protein kinase-like (PK-like)	192	476	IPR011009	-
Vium2187g00003	496	Gene3D	Phosphorylase Kinase; domain 1	180	282	-	-
Vium2187g00003	496	Gene3D	Transferase(Phosphotransferase) domain 1	284	490	-	-
Vium2187g00003	496	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	182	481	-	-
Vium2187g00003	496	Pfam	Protein kinase domain	208	473	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium2187g00003	496	ProSiteProfiles	Protein kinase domain profile.	207	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium2187g00003	496	CDD	STKc_IRAK	213	478	-	-
Vium2187g00003	496	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	179	282	-	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2187g00003	Vium-Chr2187	25732	29828	Dispersed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2187g00003	195	477	Trihelix Transcription Factor Family	AT5G38560	44.483	1.19e-79	260

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Vium2187g00003		Pkinase	1.4e-41	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2187g00003	-		-	vum:124829419	1012.68

Showing 1 to 1 of 1 entries

Previous1Next