Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2184g00001 ATGCAAGGCCGCCCTACAAAATCCTTCAGTGGTGGCTGGAGAATGAGAATTTCCTTAGCTCGAGCACTTTTTGTACAACCAACGCTATTATTACTTGATGAACCCACAAATAATCTCGACCTGAGGGTTGTTCTCGGGTTGGAAGAGTATTTGTGCTGTTGGAAGAAAACTTTGGTAGTTGTCTCACATGATATAGATTTTCTCAATACATTATGTATTCAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGATACGAACAGTGTCATAAAGAGATGAATAAGAAGTTTGCGATTCTTGTGCAAATTGGGTTAATGAAAGAAGAGATCGCGATGAAGGTTTGGGCCAATTCTACACTAGTGAATGCATTAGTGAAGATATCTCATGGGAAGAGCTATGGTTTGGTTGGACCTAATGGAAAGGGCAAGTCCACACTGCTAAAACTTCTTGCCTGGAGGAAGATACCGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGATACGAACAGTGTCATAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAGTTGAAAACATCTAAAAGGAGTGGAAACCGAGCCCAGCAAGAAAAGGTTAAGGATCCATCATTCTGCTCCTCTGAATCAAGTTTGCGATTCTTGTGCAAATTGGGTTAA 729 0.3855 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNNLDLRVVLGLEEYLCCWKKTLVVVSHDIDFLNTLCIQIIHLHDLKLHFYRGNFDDFESGYEQCHKEMNKKFAILVQIGLMKEEIAMKVWANSTLVNALVKISHGKSYGLVGPNGKGKSTLLKLLAWRKIPIIHLHDLKLHFYRGNFDDFESGYEQCHKEMNKKYEIYDKQLKTSKRSGNRAQQEKVKDPSFCSSESSLRFLCKLG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2184g00001 242 Gene3D - 1 110 IPR027417 -
Vium2184g00001 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 94 IPR027417 -
Vium2184g00001 242 Pfam ABC transporter 6 37 IPR003439 GO:0005524
Vium2184g00001 242 Pfam ABC transporter 133 167 IPR003439 GO:0005524
Vium2184g00001 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 168 IPR027417 -
Vium2184g00001 242 Gene3D - 115 229 IPR027417 -
Vium2184g00001 242 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 127 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2184g00001 Vium-Chr2184 12705 17523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2184g00001 9 84 Calmodulin-binding Proteins AT2G36910 34.831 4.99e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2184g00001 K06184 - vum:124829413 500.745