Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium217g00005 ATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCATGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCCGGGAATTGGAGATTGGTTCCCTCTAATACAGGGTTGATGAGATGCAGCAAAAGCTGCCGACTCAGATGGACCAACTATCTCCGACCTGGAATCAAACGAGGCAATTTCACCGATCATGAAGAGAAAATGATAATCCACCTCCAAGCCCTTTTGGGTAACAGATGGGCTGCAATAGCCTCCTATCTTCCACAGAGGACAGACAATGACATAAAGAACTATTGGAATACCCATTTGAAAAAGAAGCTGAAGAAGTTGCAGAGCGAGGAGGGTGATGACGAAGGTAACAATTACGAAAAGGGAAACTCTTGTTCACAGCTAAAGGGTCAGTGGGAGAGAAGACTTCAAACAGATATCCACATGGCCAAACAAGCCTTATGTGAGGCTTTGTCCCTTGACAAACCAAGCCAAATCTTCCCTGAGACCAAACTACCCTCCACTTCTTCCCACCCCACATCACCAAACAAAACATCGTCCTTGTACGCCTCGAGCACAGAAAACATAGCCAGGTTGCTGGACAATTGGATGAAAAAATCTCCAAACAAAACCGAAACAAACTGCTCCACGAGCAACATGGTAACCACAGGGTCTAGTTCGAGTGAGGGAACACAAAGCACGGTGACATGCACACAGGACCAGTTTGACTCCTTGTGGAGTTTCAACTATGAGCGTTCACAGTCTGTGTCAGCAGAAGAGAACACGAACTTGGTGGAGAGCAAGCCAAACGTAGAGACGCAAGTGCCTCTGATGCTGCTGGAGAATTGGCTTTTCGAGGATGGCGCACCTCAGTGCAACGAAGATCTCATGAACATGTCGCTGGAGGAAACTGCAGATGGGTTGTTCTAG 945 0.4709 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRLVPSNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQSEEGDDEGNNYEKGNSCSQLKGQWERRLQTDIHMAKQALCEALSLDKPSQIFPETKLPSTSSHPTSPNKTSSLYASSTENIARLLDNWMKKSPNKTETNCSTSNMVTTGSSSSEGTQSTVTCTQDQFDSLWSFNYERSQSVSAEENTNLVESKPNVETQVPLMLLENWLFEDGAPQCNEDLMNMSLEETADGLF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium217g00005 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium217g00005 314 MobiDBLite consensus disorder prediction 171 195 - -
Vium217g00005 314 CDD SANT 16 61 IPR001005 -
Vium217g00005 314 Gene3D - 68 161 - -
Vium217g00005 314 FunFam MYB-related transcription factor 13 66 - -
Vium217g00005 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium217g00005 314 Gene3D - 13 66 - -
Vium217g00005 314 SMART sant 66 114 IPR001005 -
Vium217g00005 314 SMART sant 13 63 IPR001005 -
Vium217g00005 314 MobiDBLite consensus disorder prediction 212 238 - -
Vium217g00005 314 MobiDBLite consensus disorder prediction 173 195 - -
Vium217g00005 314 FunFam Transcription factor MYB30 68 126 - -
Vium217g00005 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium217g00005 314 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium217g00005 314 CDD SANT 69 111 IPR001005 -
Vium217g00005 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Vium217g00005 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium217g00005 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vium217g00005 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium217g00005 Vium-Chr217 108191 109841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium217g00005 1 314 MYB Transcription Factor Family AT5G62470 50.407 3.46e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium217g00005 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium217g00005 K09422 - gmx:100794319 509.22