Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium217g00004 ATGAAGAAGAGACAGGTGGTGCTGAAAAGAGATGTGGCCAACACTTCGTCTTCAGTGACCAGAAATGTAAGATATGGAGAGTGCCAGAAGAATCATGCAGCGAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCTAGTACAGGGGATGGAGGTGGTGGGGCTCTTACATGCGCTGCTTGTGGCTGCCACAGGAACTTTCACAGAAGGGAAGTGCAAACTGAGGTAGTATGTGAGTACTCTCCTCCTAATTCTGCTCGCTAA 273 0.4908 MKKRQVVLKRDVANTSSSVTRNVRYGECQKNHAANIGGYAVDGCREFMASTGDGGGGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium217g00004 90 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Vium217g00004 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Vium217g00004 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 78 - -
Vium217g00004 90 Pfam ZF-HD protein dimerisation region 22 75 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium217g00004 Vium-Chr217 69736 70627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium217g00004 1 88 Zinc finger-homeobox gene family AT1G18835 78.652 6.64e-43 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium217g00004 ZF-HD_dimer 1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium217g00004 - - gmx:100785967 162.925