LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2179g00012	ATGTATAATAAAGAAAACATTCCTTCAACACCTGCCACCTCAGGCATTTTTGTTGCCACCTCAGGCACTTCTGGTGCACTTCTTTCTAGAAGTTTCACCAATGCCAACAATACAACAAATAATACTAATAAGAATTTCCTTCCCAAGTGTTGTAGATGCTTGACTTTGGATGATAGGACCATAGAAGATGGAGCCTTACCATCCGTCTCATGCTCTTTGTCACTGTCTCCTCTTGTGCCTTTGGCAAGAAAGGTCGGTGTTGACTTCATCGGGACCTTCATTCTTATGTTCGTCGCCACTACCGCTGCCATTGTCAACGAGAAGACAAACAACTCTGAGACTCTCATAGGTTGTGCTGCCACCACTGGTCTTGTTGCTATGATCCTCATCTTTGCCACAGGCCACATCTCTGGTGCTCACTTCAATCCTGCCGTCACCCTTTCCTTTGCTGCATTGAAACACTTCCCTTGGAAACATGTGCCTATGTATATTGGTGCACAAATTTTTGCATCGATTTGTGCCTCATTTGCCATGAAATGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACAGTTCCTTTAGGAGGATACGTCCCATCTTTTGCTTTGGAATTCATTATTGCCTTTAATCTAATGTTCGTTGTCACTGCAGTAACCACCGACACCAGAGTTGTGAGTGTATTTTTCTCCTCTCATTACATCCTTCAGATCTGA	714	0.437	MYNKENIPSTPATSGIFVATSGTSGALLSRSFTNANNTTNNTNKNFLPKCCRCLTLDDRTIEDGALPSVSCSLSLSPLVPLARKVGVDFIGTFILMFVATTAAIVNEKTNNSETLIGCAATTGLVAMILIFATGHISGAHFNPAVTLSFAALKHFPWKHVPMYIGAQIFASICASFAMKWVYHPFMSGGVTVPLGGYVPSFALEFIIAFNLMFVVTAVTTDTRVVSVFFSSHYILQI	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2179g00012	237	PANTHER	AQUAPORIN NIP2-1	62	225	IPR034294	-
	Vium2179g00012	237	Gene3D	Glycerol uptake facilitator protein.	67	234	IPR023271	-
	Vium2179g00012	237	SUPERFAMILY	Aquaporin-like	79	225	IPR023271	-
	Vium2179g00012	237	PRINTS	Major intrinsic protein family signature	203	221	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00012	237	PRINTS	Major intrinsic protein family signature	83	102	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00012	237	PRINTS	Major intrinsic protein family signature	159	178	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00012	237	PRINTS	Major intrinsic protein family signature	122	146	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00012	237	ProSitePatterns	MIP family signature.	140	148	IPR022357	-
	Vium2179g00012	237	Pfam	Major intrinsic protein	82	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2179g00012	Vium-Chr2179	50865	51751	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2179g00012	3	225	Major Intrinsic Protein MIP	AT1G80760	59.292	7.71e-86	255

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2179g00012	K09874		-	gmx:100815637	290.426