LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2179g00011	ATGTATAATAACGAAAACATTCCTTCAACACCTGCCACCTCAGGCATTTTTGTTGCCACCTCAGACACTTCTGGTGCACTTCTTTCTAGAAGTTTCACCAATGCCAACAATACAACAAATAATACTAATAAGAATTTCCTTCCCAAGTTTTGTAGATGCTTGACTTTGGATGATAGGACCATAGAAGATGGAGCCTTACCATCCGTCTCATGCTCTTTGTCACTGTCTCCTCTTATGCCTTTGGCAAGAAAGGTCGGTGTTGACTTCATCGGGACCTTCATTCTTATGTTCGTCGCCACTACCGCTGCCATTGTCAACGAGAAGACAAACAACTCTGAGACTCTCATAGGTTGTGCTACCACCATTGGTCTTGTTGCTATGATCCTCATCTTTGCCACAGGCCACATCTCTGGTGCTCACTTCAATCCTGCCGTCACCCTTTCCTTTGCTGCATTGAAACACTTCCCTTGGAAACATGTGTTGCCTATGTATATTGGTGCACAAATTTTTGCATCGATTTGTGCCTCATTTGCCATGAAATGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACAGTTCCTTTAGGAGGATACGCCCCATCTTTTGCTTTGGAATTCATTATTGCCTTTAATCTAATGTTCGTTGTCACTGCAGTAGCCACCGACACCAGAGTTCTGAGTGTATTTTTCTCCTCTTATTACATCCTTCAGATCTGA	717	0.4324	MYNNENIPSTPATSGIFVATSDTSGALLSRSFTNANNTTNNTNKNFLPKFCRCLTLDDRTIEDGALPSVSCSLSLSPLMPLARKVGVDFIGTFILMFVATTAAIVNEKTNNSETLIGCATTIGLVAMILIFATGHISGAHFNPAVTLSFAALKHFPWKHVLPMYIGAQIFASICASFAMKWVYHPFMSGGVTVPLGGYAPSFALEFIIAFNLMFVVTAVATDTRVLSVFFSSYYILQI	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2179g00011	238	Gene3D	Glycerol uptake facilitator protein.	65	236	IPR023271	-
	Vium2179g00011	238	PANTHER	AQUAPORIN NIP2-1	62	225	IPR034294	-
	Vium2179g00011	238	Pfam	Major intrinsic protein	82	227	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00011	238	ProSitePatterns	MIP family signature.	140	148	IPR022357	-
	Vium2179g00011	238	PRINTS	Major intrinsic protein family signature	83	102	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00011	238	PRINTS	Major intrinsic protein family signature	160	179	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00011	238	PRINTS	Major intrinsic protein family signature	122	146	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00011	238	PRINTS	Major intrinsic protein family signature	204	222	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00011	238	SUPERFAMILY	Aquaporin-like	78	228	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2179g00011	Vium-Chr2179	49706	50509	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2179g00011	3	227	Major Intrinsic Protein MIP	AT1G80760	57.456	1.25e-82	247

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2179g00011	K09874		-	gmx:100815637	288.115