LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2179g00010	ATGTATAATAACGAAAACATTCCTTCAACACCTGCCACCTCAGGCATTTTTGTTGCCACCTCAGACACTTCTGGTGCACTTCTTTCTAGAAGTTTCACCAATGCCAACAATACAACAAATAATACTAATAAGAATTTCCTTCCCAAGTTTTGTAGATGCTTGACTTTGGATGATAGGACCATAGAAGATGGAGCCTTACCATCCGTCTCATGCTCTTTGTCACTGTCTCCTCTTATGCCTTTGGCAAGAAAGGTCGGTGTTGACTTCATCGGGACCTTCATTCTTATGTTCGCCGCCACTACCGCTGCCATTGTCAACGAGAAGACAAACAACTCTGAGACTCTCATAGGTTGTGCTACCACCATTGGTCTTGTTGCTATGATCCTCATCTTTGCCACAGGCCACATCTTTGGTGCTCACTTCAATCCTACCGTCACCCTTTCCTTTGCTGCATTGAAACACTTCCCTTGGATCCAAGTGCCTATGTATATTGGTGCACAAATTTTTGCATCGATTTGTGCCTCATTTGCCATGAAATGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACAGTTCCTTTAGGAGGATACGCCCCATCTTTTTCTTTGGAATTCATTATTGCCTTTAATCTAATGTTCGTTGTCACTGCAGTAGCCACCGACACCAGAGTTCTGAGTGTATTTTTCTCCTCTTATTACATCCTTCAGATCTGA	714	0.4314	MYNNENIPSTPATSGIFVATSDTSGALLSRSFTNANNTTNNTNKNFLPKFCRCLTLDDRTIEDGALPSVSCSLSLSPLMPLARKVGVDFIGTFILMFAATTAAIVNEKTNNSETLIGCATTIGLVAMILIFATGHIFGAHFNPTVTLSFAALKHFPWIQVPMYIGAQIFASICASFAMKWVYHPFMSGGVTVPLGGYAPSFSLEFIIAFNLMFVVTAVATDTRVLSVFFSSYYILQI	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2179g00010	237	Pfam	Major intrinsic protein	82	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00010	237	PRINTS	Major intrinsic protein family signature	83	102	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00010	237	PRINTS	Major intrinsic protein family signature	159	178	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00010	237	PRINTS	Major intrinsic protein family signature	203	221	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00010	237	PRINTS	Major intrinsic protein family signature	122	146	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vium2179g00010	237	PANTHER	AQUAPORIN NIP2-1	62	224	IPR034294	-
	Vium2179g00010	237	ProSitePatterns	MIP family signature.	140	148	IPR022357	-
	Vium2179g00010	237	Gene3D	Glycerol uptake facilitator protein.	65	235	IPR023271	-
	Vium2179g00010	237	SUPERFAMILY	Aquaporin-like	78	227	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2179g00010	Vium-Chr2179	48464	49267	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2179g00010	3	226	Major Intrinsic Protein MIP	AT1G80760	55.947	8.74e-81	243

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2179g00010	K09874		-	gmx:100815637	283.108