Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2178g00006 ATGACGACGCCGCTGAATCTCGCCGCCGGAGATTTTTCGTTCCATTTCTCCTCATCGATTGGCTCTTACCGCCGGAACTCTGTCCGAGCAGTTGCAGCGGAAGCGGTCAAGGTGCGGCTGCCGGCGCCGAGCCTCTACGAGGTGCTGCGCATCCAACGCCACGCTTCGCCGACGGAGATCAAGTCTGCTTACCGGAGCCTCGCAAAGCTCTATCATCCCGACGCGGTGGTGCGCCATGCGACAGAGGACGTTAGAGCTGGCGAAGCTGCCGACGGAAACTTCATCCAGATCCGAAGCGCGTACGAGACGCTATCGGATCCATCGGCAAGGGCGACGTACGATCGAACGCTGACGGCGGTGCACGGCGGAAGACACCGCCATTTTCCGGTTCCTCTTAGCCGGAATCACTCGTCGACGTTTTACGCAACACGGAGATGGGAAACGGACCAATGCTGGTAG 459 0.6013 MTTPLNLAAGDFSFHFSSSIGSYRRNSVRAVAAEAVKVRLPAPSLYEVLRIQRHASPTEIKSAYRSLAKLYHPDAVVRHATEDVRAGEAADGNFIQIRSAYETLSDPSARATYDRTLTAVHGGRHRHFPVPLSRNHSSTFYATRRWETDQCW 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2178g00006 152 SUPERFAMILY Chaperone J-domain 39 118 IPR036869 -
Vium2178g00006 152 Pfam DnaJ domain 45 114 IPR001623 -
Vium2178g00006 152 Gene3D DnaJ domain 32 127 IPR036869 -
Vium2178g00006 152 CDD DnaJ 46 106 IPR001623 -
Vium2178g00006 152 PRINTS DnaJ domain signature 64 79 IPR001623 -
Vium2178g00006 152 PRINTS DnaJ domain signature 46 64 IPR001623 -
Vium2178g00006 152 PRINTS DnaJ domain signature 89 109 IPR001623 -
Vium2178g00006 152 ProSitePatterns Nt-dnaJ domain signature. 94 113 IPR018253 -
Vium2178g00006 152 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 14 152 - -
Vium2178g00006 152 SMART dnaj_3 43 109 IPR001623 -
Vium2178g00006 152 ProSiteProfiles dnaJ domain profile. 44 117 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2178g00006 Vium-Chr2178 81777 82631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2178g00006 46 114 C2H2 Transcription Factor Family AT1G74250 44.928 2.39e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2178g00006 - - var:108320973 301.597