Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2178g00002 ATGAAGATCACTGTCATGACTGTTGATGAACAAATTCTCACATTGGATGTGGATCCCCACGAATCTGTGGAGAACGTCAAAGCATTGCTCGAGGTTGAGACTAGTGTGCCTCTTCAACAACAACAGCTTCTGTTCAATGGGAAGGAGGTGAAGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTGTCAGGTGCTGCGGCCGGCTCCGCCGCTTCTAGTGGGTCTACCAATGATTTGAGTTTGAATACCGATGGTTCCGCTGTCAACCCTGGTGCTTTCCAGCAGCACATAAGAAGAGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAAGAAGTTTTGAGATTGCGTCATCGCCAAAGAGATGAATTAAAGCGTCAGAAAGAAGAAGAACTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAACCCCGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGCTGAGGCTTTTAGATCAGCGATACAGAGGGATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGCATACATGTAGCGCCAATCAAGATTGGGAGTATATTTTACCCATGCTCATTCTTGGTGCTGGACTCTCCCAATATGGAGTTTCTATTTGGACTGGATATGCTCCGAAAACACCAGTGTATAATTGACTTGAAAGAAAGTGTTTTGCGAGTTGGTGGAGGTGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAAAAGTATGCTAAGGAAGCTTCTGGTTCTGGTGGCCATATTACATCAGGGAGCAATAATCCATCAACTGGAGGCCACCCTTCTGGAGGAGCTTCTAGTGACAGAGCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAGTTGTAGAAGCTCTTCAGATATTCAATGGCAATGAGGAACAGGCTGCTGGATTTCTTTTCGGCGGCTAG 1233 0.4388 MKITVMTVDEQILTLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVKNSEKLSALGVKDDDLLMMVSGAAAGSAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRLRHRQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGHITSGSNNPSTGGHPSGGASSDRAKDSEFEAKVAKLVELGFERNAVVEALQIFNGNEEQAAGFLFGG 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2178g00002 410 MobiDBLite consensus disorder prediction 342 360 - -
Vium2178g00002 410 Gene3D - 345 410 - -
Vium2178g00002 410 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 407 - -
Vium2178g00002 410 SMART uba_6 372 409 IPR015940 -
Vium2178g00002 410 SUPERFAMILY Acid proteases 187 302 IPR021109 -
Vium2178g00002 410 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Vium2178g00002 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 410 IPR015940 -
Vium2178g00002 410 SUPERFAMILY UBA-like 350 410 IPR009060 GO:0005515
Vium2178g00002 410 Gene3D Acid Proteases 180 326 IPR021109 -
Vium2178g00002 410 Gene3D - 1 86 - -
Vium2178g00002 410 SMART ubq_7 1 72 IPR000626 GO:0005515
Vium2178g00002 410 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Vium2178g00002 410 Pfam UBA/TS-N domain 373 406 IPR015940 -
Vium2178g00002 410 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Vium2178g00002 410 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Vium2178g00002 410 MobiDBLite consensus disorder prediction 338 367 - -
Vium2178g00002 410 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Vium2178g00002 410 CDD UBA_scDdi1_like 373 408 - -
Vium2178g00002 410 Coils Coil 131 154 - -
Vium2178g00002 410 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vium2178g00002 410 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vium2178g00002 410 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vium2178g00002 410 FunFam DNA damage inducible 1 homolog 2 179 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2178g00002 Vium-Chr2178 3777 11847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2178g00002 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.95e-07 48.1