Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2178g00001 ATGAAGATCACTGTCATGACTGTTGATGAACAAATTCTCACATTGGATGTGGATCCCCACGAATCTGTGGAGAACGTCAAAGCATTGCTCGAGGTTGAGACTAGTGTGCCTCTTCAACAACAACAGCTTCTGTTCAATGGGAAGGAGGTGAAGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTGTCAGGTGCTGCGGCCGGCTCCGCCGCTTCTAGTGGGTCTACCAATGATTTGAGTTTGAATACCGATGGTTCCGCTGTCAACCCTGGTGCTTTCCAGCAGCACATAAGAAGAGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAAGAAGTTTTGAGATTGCGTCATCGCCAAAGAGATGAATTAAAGCGTCAGAAAGAAGAAGAACTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAACCCCGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGCTGAGGCTTTTAGATCAGCGATACAGAGGGATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGCATACATGTAGCGCCAATCAAGATTGGGAGTATATTTTACCCATGCTCATTCTTGGTGCTGGACTCTCCCAATATGGAGTTTCTATTTGGACTGGATATGCTCCGAAAACACCAGTGTATAATTGACTTGAAAGAAAGTGTTTTGCGAGTTGGTGGAGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAAAAGTATGCTAAGGAAGCTTCTGGTTCTGGTGGCCATATTACATCAGGGAGCAATAATCCATCAACTGGAGGCCACCCTTCTGGAGGAGCTTCTAGTGACAGAGCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAGTTGTAGAAGCTCTTCAGATATTCAATGGCAATGAGGAACAGGCTGCTGGATTTCTTTTCGGCGGCTAG 1206 0.4395 MKITVMTVDEQILTLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVKNSEKLSALGVKDDDLLMMVSGAAAGSAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRLRHRQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGEKDIPSRFLDEEKYAKEASGSGGHITSGSNNPSTGGHPSGGASSDRAKDSEFEAKVAKLVELGFERNAVVEALQIFNGNEEQAAGFLFGG 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2178g00001 401 CDD UBA_scDdi1_like 364 399 - -
Vium2178g00001 401 FunFam DNA damage inducible 1 homolog 2 179 327 - -
Vium2178g00001 401 Gene3D Acid Proteases 180 326 IPR021109 -
Vium2178g00001 401 SUPERFAMILY UBA-like 341 401 IPR009060 GO:0005515
Vium2178g00001 401 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Vium2178g00001 401 Gene3D - 1 86 - -
Vium2178g00001 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 358 401 IPR015940 -
Vium2178g00001 401 SUPERFAMILY Acid proteases 187 302 IPR021109 -
Vium2178g00001 401 MobiDBLite consensus disorder prediction 329 358 - -
Vium2178g00001 401 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vium2178g00001 401 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vium2178g00001 401 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 398 - -
Vium2178g00001 401 SMART uba_6 363 400 IPR015940 -
Vium2178g00001 401 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Vium2178g00001 401 SMART ubq_7 1 72 IPR000626 GO:0005515
Vium2178g00001 401 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Vium2178g00001 401 Gene3D - 336 401 - -
Vium2178g00001 401 Pfam UBA/TS-N domain 364 397 IPR015940 -
Vium2178g00001 401 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Vium2178g00001 401 Coils Coil 131 154 - -
Vium2178g00001 401 MobiDBLite consensus disorder prediction 333 351 - -
Vium2178g00001 401 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Vium2178g00001 401 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2178g00001 Vium-Chr2178 3777 11849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2178g00001 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.11e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2178g00001 K11885 - gmx:100779464 742.265