Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2177g00003 ATGGCTGCCGAAAAAATTGCCGGTGCTCTAGTGTCCACCTTTGTTGAGAGGACTATTGACAATTTGGCTTCTCGTTTTGTAGACATATTTCGTGGAAATAAAAGCCACAAGAAGCAGTTAAGCAACTTGAAGGTGAAGCTCCTAGCCGTTGATGTTGTGGCTGATGATGCAGAACAGAAACAGTTCACAGATCCATGTGTGAGAGATTGGCTTCTCGCAGCCAAAGATGCCGTGTATGATGCAGAGGATCTCCTGGAGGAAATAGACCATGATGCTAAAGAGGTTGGGAATCCCCTCACTTCTTTTATCAGTTTCTTTGAAAATAAATTTGAATCAAGGATGGAAAAACTCATTGAAGACCTAGAAGATCTTGCAACACAAAGTCATCTTCTAGGTTTGGAAAGAGGTCATGATTTTGGGGAGGGATCAAGATCGGGCAGTAAACTAACATCAACATATTTGCCAAACGATAGTGTTATCTATGGCAGAGATGATGACAAAGAATTTGTCTTTAACTGGCTCACATCTGACATTCCCGACAACCTATCTATACTTTCTATAGTGGGAATGGGAGGGGTGGGTAAGACCACTCTTGCCCAACATGTATTCAATGATCCAAGGGTGGATGAGGCTAAATTTGATGTCAGAGCCTGGGTTTGTGTTTCAGTTGAATCTGATGTTTTCAAAGTATCAAGAAAAATTCTTGAGGATGTTACTAGATCACCTGATCATAGTTCAGATACAGATATGGTTCACAGAAGATTGAAAGAAAAATTGACGGGCAAAAAATTTCTTGTTGTTTTGGATGATGTTTGGAACGAAACCCTATCTAATTGGAAAGAGGTGCAAAAACCCCTTCTTCTCGGAGCCCAAGGAAGTAGAATTGTTGTGACTACCCGTAGTAAGGAAGTTGCTTCTACCATGTTTTCAGAAGAACGCTTTCTAAAGCAATTGCAGGAAGATGATAGCTGGGAGTTGTTTGCTAAACATGCATTTCGTGATGATACTCAACCAAATCCAGAATGCAGAGAGATTGGCAAGAAGATTGTTAAAAAATGTAAAGGACTACCTCTTGCCTTGAAAGCAATAGGAAGTCTATTATACAACAAATCATCTGTTTCAGAATGGGACACTGTGTTCCAAAACGAGATATGGGAAATTCCAAAAGATCGTTGTGATATTGTTCCCGCTTTAGCATTGAGCTATGTCCACCTGCCTTCCCATTTGAAGACCTGCTTTGCTTATTGTGCCTTGTTCCGCAAGGATTATGAGTTTAAGAAGGAAGAGTTGACTCAGTTGTGGATGACTGAAAACTTTCAACAGCATAGTAAGACTCCGGATGAAACTTGCCAACAATACTTCAATGATCTATTATCAAGGTCCTTCTTTCAACCCTCAGGTAATGGGAAAGAACTATTTGTCATGCATGACCTTCTAAATGATTTGGCAAGATACATCGCCGGAGACATATTTTTCAGGTGCAAAGATAGTCAAACAAATAATATACAAAAAGTAACTCGGCATTTTTTATTTGAACTTCCTAACTTTGGACGCTTTCATGAATTTGGAACTTTATGCAAAACGGAAAGCTTGCGTACATTTCTACCAACACCAGATAGGAAACTGGATTACTTTCATTGGTTTTGCAGTATGTCGATACATGAATTGTTCTCCGAGTTCATGTTCTTGCGTATTTTATCGCTCTCTCATTGTTCTAACCTTTTAGAGTTACCTGATTCTGTCGGCAATCTTAAACTTCTTCGTTCCTTAGACCTCTCTCATACTGCAATAAGAAAACTACCTGAAAAAATATGTTCACTATCCCACTTGCAAATACTGGAGTTGAACTATTGTACATATTTGGAAGAGTTGCCCATAAATTTGCATTTACTTACTAATTTGTGTAGCCTTGAATTTAGGTTCACTAAAGTGAGAAAAGTGCCACCAGGTTTGGAAAAATTAAAGAATCTTGTAGTAATGATGAATGTCTTTTATGTTGACCATAGCATGGAGTCGGGTATTCAACGGCTAGGAAAGCTTAATAACCTTTCTGAACACCTAGAAATTTGGGGACTGCAGTGCATTAAGAATCCTGAGGATGCATTAGAAGTCGATTTGAAGAATAAAACACACATTGTGAGGCTGACATTGGCATTGGAGAGGACTGGGAACTCTATTGATTCAAAAAAAGAAGAAGACGTAATTGAGAATCTGCAACCTTCCAAAAACTTAAAGGAGTTGTCAATCTTAAACTATGGTGGGAGTAAATTTCCAAACTGGTTACTAGAAGATTCGTTACCAAACCTGGTGTCCTTAGTGTTGCTCAATTGTAAATCTTGCCAACATTTACCTCCGCTTGGTCTTTTGCCATTTCTGAAGAGCCTGTATATTTCAGGGTTTGATGAGACCGTGAGCATTGATGCTTATTTTCATGGAAACAACTCTTCTTCATTTCAATCCCTTAAAAAGTTGGAGTTCTCCGATATGAAGCAATGGGAAAAATGGGAATGCCAAGCTGTGACAGGTGCTTTTCCAAATCTTCAAATTCTTTCTCTGAAGAAATGTCCGAAACTGAAAGGACAGCTGCCAGAGCTACTTGTTCCTTTGAAAACACTAAAAATTACACGTTGCCAACAACTTGAAGCTTTCCCTCCCAGGACTCTAGAATTAGACCTACGTCACTGTGGAAAGTTGCAATTGGATTGGGCTCCAATGGAATGGCCTAGAATGGACGGGCACCACATGACAGCATTTTTCTCTGAAAGTGATGGGTCCCACACTCTTGATGATTTGGAAATTGTAGAGGTAATCAGTGATGGCTCTATCCCTCTAACGACCTTTCCACTAGACTCCTTCCCAACAGTCAAGAGACTTGTTCTCTCTTGGTTACGTAATCTAGAGATGATTTCACAAGATCAAGCTCATCATGATCATCTACTGGATCTGACAATCACAAGATGTCCTAAATTTGAATCGTTGTCTGGAAACATGCGTGTGTTGTCTCTTACATCGCTATGGATAGAAGACTGTCCAAGATTTAAGTCGATCCCTTACGGAGGTTTGCCATCAAATTTGGAGAATCTGACAATCAAAGGGTGCCCTAAGTTTGAATCATTACCCGACTCTGTTGGCAATCTCAAGCTTCTTCGTTCCTTAGACCTCTCTGATACTGCAATAAGAAAACTACCTGAAAATATATGTTCACTATCCCACTTGCAAATACTGGAGTTGAACTATTGTACATATTTGGAGGAGTTGCCCATAAATTTGCATTTACTCACTAATTTGTGTCGCCTTGAATTTAGGTTCACTAAAGTGAGAAAAGTGCCACCAGGTTTGGAAAAGCTAAAAAATCTTAAAGTAATAATGAGTAACTTTAATGTTGACCTTATCATGGAGTCGGGTATTCAACGGCTAGGAAAGCTCAACAACCTTTACGAAGACTTATCAATTGGGGAACTGCATGACATTGAGAATCCTCAGGATGCATTCGAAGCTGATTTGAAGAATAAAACACACATTGAGAGTCTGACATTGGGATGGGAGAGGACTGGGAACTCTATTGATTCAAAAAAAGCAGAGGACGTACTTGAGAATCTGCAACCTTCCAAAACCTTAAAGGAGTTGTCAATCTTTAACCATGGTGAGAATAAATTTCCAAACTGGTTGCAACAAACTTCAATTTGGAATATGGTGTCGTTAGAGTTGGACAAATGTAAATCTTGCCAAAGTTTACCTCCGCTTGGTCTTTTGCCATTCCTCAAGAAGCTGGTGATTTCAGGGTTTGATCAGATAGTGAATGTTGATGCTGATTTTCATGGGAAGAACTCTTCTTCGTTTAAATCTCTTGAAACATTGTATTTCTCCGATATGAGACAATGGGAAAAATGGGAATGTAAAGTTGTGACAGGTGCTTATCCATGTCTACAACATCTTTCTATAAGCTTTTGTCCCAAACTAAAAGGACAATTGCCAGAGCAACTTGTTCCTTTGGAAACACTACACATTACAAACTGCGAACAACTTGAGGCTTTCGCTCCAAGGGCTCTAGATTTAGAACTACGTAACTGTGGAAAGCTACAATTGGATTCGGCCATGAAAAGGCTCGTAATGGGTGGGCACAACACGGAAGCATCCTTGCTGGAAATGGTTGGATCTAACACTCTTGAGCACTTGGACATTTCTTCATCCCTGGAGTCCATGAGTGATGACTGTGTCTTTGTAAGGACCATTTCACTAGATTTCTTTCCAATACTCAGGACCCTTAATCTTAGAGGGTTTGGTAATCTACAGAAGGTTTTACAGGATCACGCTCATTATCATCTCCAGGATCTGACAATCAAAAAATGTCCTAAATTTGAATCATTATCTGGAATCATGCATATGTTGTCTCTCAAATCACTATGGATAGAAGATTGTCCGAGACTTGTGTCGTTTCCTGATGGAGGTTTGCCATCAAATCTAAATGACATGAGACTGAGTAATTGTTCTAGACTTGTTTGCTCACTGAAAGGAGCTTTCGGAGACCGTTCTTCTTTGGAAAGCTTGTGGATTGAAGGAATGGATGCAGAATGTTTTCCTGGTGAAGGCTTGCTTCCACTCTCTCTTACTTCTTTAACAATATGTGATTGTCCAAATCTAGAAAAGTTAGATTATAAAGGTCTTTATCAACTCTCATCTCTCAGAAGACTGACTCTTGTTAGCTGCCCTAACCTCCAATGCTTACCAGAGGAAGGTCTTCCAAGATCAATTTCATATCTTTGTATAGGCGATTGTCCTTTGCTCGAACAGCGTTGCCAGACAGAAGGAGGGGAAGATTGGGAAAAGATTGCTCACATTCAAAATCTGAATATATTGTAA 4860 0.3959 MAAEKIAGALVSTFVERTIDNLASRFVDIFRGNKSHKKQLSNLKVKLLAVDVVADDAEQKQFTDPCVRDWLLAAKDAVYDAEDLLEEIDHDAKEVGNPLTSFISFFENKFESRMEKLIEDLEDLATQSHLLGLERGHDFGEGSRSGSKLTSTYLPNDSVIYGRDDDKEFVFNWLTSDIPDNLSILSIVGMGGVGKTTLAQHVFNDPRVDEAKFDVRAWVCVSVESDVFKVSRKILEDVTRSPDHSSDTDMVHRRLKEKLTGKKFLVVLDDVWNETLSNWKEVQKPLLLGAQGSRIVVTTRSKEVASTMFSEERFLKQLQEDDSWELFAKHAFRDDTQPNPECREIGKKIVKKCKGLPLALKAIGSLLYNKSSVSEWDTVFQNEIWEIPKDRCDIVPALALSYVHLPSHLKTCFAYCALFRKDYEFKKEELTQLWMTENFQQHSKTPDETCQQYFNDLLSRSFFQPSGNGKELFVMHDLLNDLARYIAGDIFFRCKDSQTNNIQKVTRHFLFELPNFGRFHEFGTLCKTESLRTFLPTPDRKLDYFHWFCSMSIHELFSEFMFLRILSLSHCSNLLELPDSVGNLKLLRSLDLSHTAIRKLPEKICSLSHLQILELNYCTYLEELPINLHLLTNLCSLEFRFTKVRKVPPGLEKLKNLVVMMNVFYVDHSMESGIQRLGKLNNLSEHLEIWGLQCIKNPEDALEVDLKNKTHIVRLTLALERTGNSIDSKKEEDVIENLQPSKNLKELSILNYGGSKFPNWLLEDSLPNLVSLVLLNCKSCQHLPPLGLLPFLKSLYISGFDETVSIDAYFHGNNSSSFQSLKKLEFSDMKQWEKWECQAVTGAFPNLQILSLKKCPKLKGQLPELLVPLKTLKITRCQQLEAFPPRTLELDLRHCGKLQLDWAPMEWPRMDGHHMTAFFSESDGSHTLDDLEIVEVISDGSIPLTTFPLDSFPTVKRLVLSWLRNLEMISQDQAHHDHLLDLTITRCPKFESLSGNMRVLSLTSLWIEDCPRFKSIPYGGLPSNLENLTIKGCPKFESLPDSVGNLKLLRSLDLSDTAIRKLPENICSLSHLQILELNYCTYLEELPINLHLLTNLCRLEFRFTKVRKVPPGLEKLKNLKVIMSNFNVDLIMESGIQRLGKLNNLYEDLSIGELHDIENPQDAFEADLKNKTHIESLTLGWERTGNSIDSKKAEDVLENLQPSKTLKELSIFNHGENKFPNWLQQTSIWNMVSLELDKCKSCQSLPPLGLLPFLKKLVISGFDQIVNVDADFHGKNSSSFKSLETLYFSDMRQWEKWECKVVTGAYPCLQHLSISFCPKLKGQLPEQLVPLETLHITNCEQLEAFAPRALDLELRNCGKLQLDSAMKRLVMGGHNTEASLLEMVGSNTLEHLDISSSLESMSDDCVFVRTISLDFFPILRTLNLRGFGNLQKVLQDHAHYHLQDLTIKKCPKFESLSGIMHMLSLKSLWIEDCPRLVSFPDGGLPSNLNDMRLSNCSRLVCSLKGAFGDRSSLESLWIEGMDAECFPGEGLLPLSLTSLTICDCPNLEKLDYKGLYQLSSLRRLTLVSCPNLQCLPEEGLPRSISYLCIGDCPLLEQRCQTEGGEDWEKIAHIQNLNIL 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2177g00003 1619 PANTHER DISEASE RESISTANCE PROTEIN RP 980 1340 IPR044974 GO:0006952
Vium2177g00003 1619 Gene3D Ribonuclease Inhibitor 930 1133 IPR032675 -
Vium2177g00003 1619 Gene3D - 317 400 IPR042197 -
Vium2177g00003 1619 FunFam Probable disease resistance protein At1g61300 145 313 - -
Vium2177g00003 1619 Pfam Rx N-terminal domain 14 93 IPR041118 -
Vium2177g00003 1619 SUPERFAMILY L domain-like 1388 1611 - -
Vium2177g00003 1619 Gene3D Ribonuclease Inhibitor 1326 1485 IPR032675 -
Vium2177g00003 1619 Gene3D Ribonuclease Inhibitor 1486 1602 IPR032675 -
Vium2177g00003 1619 Gene3D Ribonuclease Inhibitor 1148 1325 IPR032675 -
Vium2177g00003 1619 PRINTS Disease resistance protein signature 605 621 - -
Vium2177g00003 1619 PRINTS Disease resistance protein signature 258 272 - -
Vium2177g00003 1619 PRINTS Disease resistance protein signature 353 367 - -
Vium2177g00003 1619 PRINTS Disease resistance protein signature 184 199 - -
Vium2177g00003 1619 FunFam Probable disease resistance protein At5g66910 317 400 - -
Vium2177g00003 1619 Gene3D Ribonuclease Inhibitor 540 911 IPR032675 -
Vium2177g00003 1619 Coils Coil 107 127 - -
Vium2177g00003 1619 SUPERFAMILY L domain-like 474 898 - -
Vium2177g00003 1619 Gene3D - 143 316 IPR027417 -
Vium2177g00003 1619 Gene3D - 401 485 IPR036388 -
Vium2177g00003 1619 Gene3D - 15 125 - -
Vium2177g00003 1619 SUPERFAMILY L domain-like 1023 1361 - -
Vium2177g00003 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 416 IPR027417 -
Vium2177g00003 1619 SMART LRR_typ_2 1046 1069 IPR003591 -
Vium2177g00003 1619 SMART LRR_typ_2 584 607 IPR003591 -
Vium2177g00003 1619 SMART LRR_typ_2 631 654 IPR003591 -
Vium2177g00003 1619 SMART LRR_typ_2 1093 1116 IPR003591 -
Vium2177g00003 1619 Pfam NB-ARC domain 164 381 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2177g00003 Vium-Chr2177 24109 29252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2177g00003 179 419 WRKY Transcription Factor Family AT5G45050 27.935 2.41e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2177g00003 - - vra:106752401 2904.78