Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2177g00002 ATGGCTGTTCAATTGATTACCGATGCTGCTCTGTCCAAATTCTTTGAGAAGACTTTTGACATTTTATTTTCTCGTTTTGAGGGCATATTTCGTGGAGATAATAAAAGTAAAAAGAAACAGATAAGCAACTTGAAGGGGAAGCTCCTGGCCATTGATGTTGTGGCTGATGATGCAGAACAGAAACAGTTCACAAATCCGCGAGTGAGAGATTGGCTTCTCGCAGCCAAAGATGCCGTGTATGATGCAGAGGATCTCCTGGAGGAAATAGATCATGATGCTAAAGAGGTTTGCAATCCCCTCACTTCTTCTTTTATCAGTTTCTTTGAAAATAAATTTGAATCAAGGATGGAAAAACTCATTGAAGACCTAGAAGATCTTGCAACACAAAGCCATGTTCTAGGTTTGAAAAAGGCTGATGATGTTGGGGTCTCAGGATGGGTCAGTAAATTACGATCAACATATTTGCCAAATGAAAGTGTTATATATGGCAGAGATGATGATAAAAAATTTGTGTTTGAGTGGCTCACATCTAACACTCACAACAACCTGTCTATACTTTCTATTGTGGGAATGCCTGGGGTGGGTAAGACCACTCTTGCCCAACATTTATTCAATGACCCAAGCATGAATAAGGATAAATTTGAAGTCAAAGTTTGGGTCTGTGTTTCAGATGAATTTGATGTTTTCAAGGTATCAAGAGCAATTCTTGAAGCTGTCACTAAATCAACTGATGATAGTAGAGATCTGGAGATGGTTCATAGAAGATTGAAAGAAAAATTGTTGGGAAAGAAATTCCTTCTCGTTTTGGATGACGTTTGGAATGAAAATCAATCTAAATGGGAAGAGGTGCAAAAGCCCCTTGTTTTCGGAGCCCAAGGGAGTAGGATTCTTGTCACTACACGTAATAAGGAAGTTGCTAGAATCATGCAGTCAGAGGAACACTCCCTAGAGCAACTACAGTACGAACATAGCTGGAGATTGTTTGCTAAACATGCATTCGGAAATGATGATACTAAACCAAATCCGAAGTACAATGAGATTGATGTCAAGATTGTTAAGAAATGTAAAGGATTACCTCTTGCCTTGAAAACAATGGGAAGTTTATTATACAACAAATCATCTGTTCCAGAATGGGAAACTGTGTTACAAAGCGAAATATGGGAATTTTCCCAAGAGCGTTGTGATATTGTTCCCGCTTTAGCATTGAGCTATATCCACCTTCCATCTCATTTGAAGGTCTGCTTTGCTTACTGTGCACTATTCCCTAAGGATTATGAGTTTAGAAAAGAGGATTTGATTCAGTTGTGGATGACTGAAAATTTCCTACACTGTCATCAACATAGTAAGAGTCCGGAAGAAGCTTGCCAACAATACTTCAATGATTTAAAATCAAGGTCCCTCTTTCAACCATTAACTGAAAAGAAAGAAGTATTTGTCATGCATGACCTTCTAAATGATTTGGCAAAATATGTTGCTGGAGGCATATATTTCAGGGGCAATATTGATCAAACAAAAAAAATACAAGAAGTAACTCGTCATTTTTCATTTGAACTTGGTTACGACCGACATTTTGAAGGGTTTGGAACTTTATACAAAAGACAAAGGTTACGTACATTTATGCCAACAGGTAGGAGCATGGATCAACTTCCCTGTTATTGGAATTGCAAAATATCGATACCTGAATTGTTCGCCATGTTTAGCTTATTGCGTATCTTATCCCTCTCTCATTGTTCTGACCTTAAAGAGGTACCTGACTGTGTCGGCAATCTTAAGTATCTTCGTTCGTTAGACCTCTCTCGTACTGCCATAAAAAAGTTATCTGAAAGCATATGTTCACTTTCCCGCTTGCAAATACTGAAATTGAATTATTGTGGCGATTTGGTGGAGTTGCCCTCAAATTTGAATTCACTCACCTCTTTGTGTCGCCTTGAATTTATAGAGACTAAAGTGATAAAGGTGCCAGATTTGAAAAATTTGAAGAATCTTAAACTAAAGATGAGTTCCTTTAACGTTGGCTGTAGTAGCGAGTTGGGTATTCAACGGTTAGGAGAGCTAAACAACCTTCATGAAAGCCTATCAATTGACGAGTTGGAGAAAATTGAGAAACCCCGGGATGCATCAGAAGCAAATTTGAAGAATAATACACACCTTGTGAAGCTAGAGTTGAAATGGAATTCAAGGAGGAAAGATAACCCTATTGATTCAAAAAAAGAAGAGGATGTAATTGACAAATTGCAACCTTCCAAAAACTTAAAGGAGTTATCAATCTTTAGCTATGGAGGCACACAATTTCCAGATTGGTTACTAGAAGATTCATCATGGGAGATGGTGTCCTTAGCCTTTAAGGAATGTAAGTCTTGCCAACGTTTACCTCCACTTGGACTTTGGAAAGATCTAAAGGACTTGAAGATTGGAGGACTTGATGGGATAGTGAGTATTGATGCTGATTTTTATGGGAACAACTCTTCTTCCTTTAATTCCCTTGAAAATTTAGAGATCTCTGATATGAAACAATTGGAAAAATGGGAGTGTAAAGCTGTGAGAGGTGCTTTTCCAAGTCTGAAACGTCTTTCAATAAGTAATTGTCCCAAGCTGAAAGGAGATCTGCCAGAGCAACTTGTTCCTTTAAATGATCTAAAGATTTCTCATTGTGATCAAGCTTTAACTGTTACTGCTCTAAAAGTGCGATGGCCTACAATGAAACGTCTAAAAATAGACGGGGACTACTTGGAAGCATCAATGGTGAAAATTGTTTGGCACTTCACTTCTCTTGAAGTCTTAGACATTAATTCACACTCGAAGACAAACAGTGATGAATCTGTCTCTCCGTGGACCTTTCCTCTACATTTCTTCCCAACATTAAGTGCGCTTAATCTCAGAGGGTTTCTTAATCTGCAGATGATCTCACAGGATGACCGTCATAATCATCTCAAGTATCTGACAATCGAAAAGTGCCCAAAATTTGAATCATTGCCTGAAAGCATGCATACATTGCTTCCATCTCTCATGAGGCTAAGCATATATGATTGTCAAAAACTTGAGTCGTTCCCTCACGGAGGTTTGCCATCAAATCTAAATTTCGTGAAACTCCAGAATTGCTGCTCCACACTTATTGGCTCATTGAAAGGAGCTTTGCGAGCCAATACCCTGAAAAGCTTGTGGATTGGACTCGTGGATGCAGAATGTTTTCCTGATGAAGGTTTGCTTCCCCTCTCTCTTACTTCTCTATGCATCTATTGTTTTGAAAATCTAAAAAAATTGGACTACGAGGGTCTTCGTCAACTCTCATCTCTCGAAAAACTGAGTCTTCGTGATTGCCCCAATCTCGAAAGCTTACCGGAGGAGGGCCTTCCCGAATCAATTTCACAATTTTCAATTTCGGGTAACTGCCCTTTACTCAAACATCGTTGTCAGAAAGAAGTAGGGGAAGACTGGGAAAAGATTTCACAGATCCAAAACCTGGATGTGGAATGA 3474 0.3883 MAVQLITDAALSKFFEKTFDILFSRFEGIFRGDNKSKKKQISNLKGKLLAIDVVADDAEQKQFTNPRVRDWLLAAKDAVYDAEDLLEEIDHDAKEVCNPLTSSFISFFENKFESRMEKLIEDLEDLATQSHVLGLKKADDVGVSGWVSKLRSTYLPNESVIYGRDDDKKFVFEWLTSNTHNNLSILSIVGMPGVGKTTLAQHLFNDPSMNKDKFEVKVWVCVSDEFDVFKVSRAILEAVTKSTDDSRDLEMVHRRLKEKLLGKKFLLVLDDVWNENQSKWEEVQKPLVFGAQGSRILVTTRNKEVARIMQSEEHSLEQLQYEHSWRLFAKHAFGNDDTKPNPKYNEIDVKIVKKCKGLPLALKTMGSLLYNKSSVPEWETVLQSEIWEFSQERCDIVPALALSYIHLPSHLKVCFAYCALFPKDYEFRKEDLIQLWMTENFLHCHQHSKSPEEACQQYFNDLKSRSLFQPLTEKKEVFVMHDLLNDLAKYVAGGIYFRGNIDQTKKIQEVTRHFSFELGYDRHFEGFGTLYKRQRLRTFMPTGRSMDQLPCYWNCKISIPELFAMFSLLRILSLSHCSDLKEVPDCVGNLKYLRSLDLSRTAIKKLSESICSLSRLQILKLNYCGDLVELPSNLNSLTSLCRLEFIETKVIKVPDLKNLKNLKLKMSSFNVGCSSELGIQRLGELNNLHESLSIDELEKIEKPRDASEANLKNNTHLVKLELKWNSRRKDNPIDSKKEEDVIDKLQPSKNLKELSIFSYGGTQFPDWLLEDSSWEMVSLAFKECKSCQRLPPLGLWKDLKDLKIGGLDGIVSIDADFYGNNSSSFNSLENLEISDMKQLEKWECKAVRGAFPSLKRLSISNCPKLKGDLPEQLVPLNDLKISHCDQALTVTALKVRWPTMKRLKIDGDYLEASMVKIVWHFTSLEVLDINSHSKTNSDESVSPWTFPLHFFPTLSALNLRGFLNLQMISQDDRHNHLKYLTIEKCPKFESLPESMHTLLPSLMRLSIYDCQKLESFPHGGLPSNLNFVKLQNCCSTLIGSLKGALRANTLKSLWIGLVDAECFPDEGLLPLSLTSLCIYCFENLKKLDYEGLRQLSSLEKLSLRDCPNLESLPEEGLPESISQFSISGNCPLLKHRCQKEVGEDWEKISQIQNLDVE 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2177g00002 1157 PANTHER DISEASE RESISTANCE PROTEIN RP 68 884 IPR044974 GO:0006952
Vium2177g00002 1157 Coils Coil 109 129 - -
Vium2177g00002 1157 Gene3D Ribonuclease Inhibitor 893 1156 IPR032675 -
Vium2177g00002 1157 Pfam Rx N-terminal domain 10 94 IPR041118 -
Vium2177g00002 1157 Gene3D Ribonuclease Inhibitor 532 892 IPR032675 -
Vium2177g00002 1157 FunFam Probable disease resistance protein At1g61300 147 314 - -
Vium2177g00002 1157 FunFam Probable disease resistance protein At1g63360 404 490 - -
Vium2177g00002 1157 Gene3D - 319 402 IPR042197 -
Vium2177g00002 1157 Gene3D - 146 318 IPR027417 -
Vium2177g00002 1157 Gene3D - 403 490 IPR036388 -
Vium2177g00002 1157 SUPERFAMILY RNI-like 804 1053 - -
Vium2177g00002 1157 PRINTS Disease resistance protein signature 259 273 - -
Vium2177g00002 1157 PRINTS Disease resistance protein signature 185 200 - -
Vium2177g00002 1157 PRINTS Disease resistance protein signature 564 580 - -
Vium2177g00002 1157 PRINTS Disease resistance protein signature 355 369 - -
Vium2177g00002 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 418 IPR027417 -
Vium2177g00002 1157 SUPERFAMILY L domain-like 479 884 - -
Vium2177g00002 1157 Gene3D - 34 124 - -
Vium2177g00002 1157 Pfam NB-ARC domain 166 383 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2177g00002 Vium-Chr2177 13837 17648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2177g00002 182 382 WRKY Transcription Factor Family AT5G45050 27.354 1.03e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2177g00002 - - pvu:PHAVU_011G202600g 1207.59