Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2175g00004 ATGTTTGTCCCCAACTTAGTGCTGTTAGATGTTACGCCGTTGTCACTTGGTATATCTGTAAACGGAGATCTCATGAATGTCGTGATTCCTAGGAACACCACCATTCCTGTTGTAAAAAAGCAAGGATATAAAAGAGCCGAAGATTTCCCATCTGCTGTGTCTATTCAGGTATACGAGGGTGAAAGGACAAGAGCAAGAGATAACAATTTGCTTGGTTTGTTTAATCTTTATGGCAATTCTTATGCTCGTCGAGGCCATAGTTTAACCGTATGTTTCAGTATAGATGCAGATGGTATCCTAACTGTAATAGCTGAGGAAGAAAGCAGTGGAAGTAAGAATGGGATTACCGTAACCAACGACAAGGGAAAACTATCAACTCAAGAAATTATGAGAATGATTCAAGAAGCCGAGAAGTACAAGGCTGAAGACCAGAAATACGAAAAGAAAGTTAAGGCAATTAATGCTTTGGATGACTTTGTTTACAAGATAAGGAATGCTATAGATGATGTAGATAATCCACAGAAGATAACGAAGATCAACATGGCTATTGCAGAGGCCGAGAAATTGCTTGATGCTAGGGAGCAGACAGAAACAGAGGTTTTTGTGGATCATCTGCACAGGGTGAAGAGCCTCATTGAATCCGTCATGAAGATTAAGTTTTAA 663 0.3967 MFVPNLVLLDVTPLSLGISVNGDLMNVVIPRNTTIPVVKKQGYKRAEDFPSAVSIQVYEGERTRARDNNLLGLFNLYGNSYARRGHSLTVCFSIDADGILTVIAEEESSGSKNGITVTNDKGKLSTQEIMRMIQEAEKYKAEDQKYEKKVKAINALDDFVYKIRNAIDDVDNPQKITKINMAIAEAEKLLDAREQTETEVFVDHLHRVKSLIESVMKIKF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2175g00004 220 Gene3D - 154 218 IPR029048 -
Vium2175g00004 220 FunFam Heat shock 70 kDa protein 2 153 - -
Vium2175g00004 220 PANTHER HEAT SHOCK PROTEIN 70KDA 5 178 IPR013126 GO:0005524|GO:0140662
Vium2175g00004 220 PRINTS 70kDa heat shock protein signature 85 101 - -
Vium2175g00004 220 PRINTS 70kDa heat shock protein signature 5 24 - -
Vium2175g00004 220 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 3 153 IPR029047 -
Vium2175g00004 220 Coils Coil 179 199 - -
Vium2175g00004 220 Pfam Hsp70 protein 4 216 IPR013126 GO:0005524|GO:0140662
Vium2175g00004 220 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 4 157 IPR029047 -
Vium2175g00004 220 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2175g00004 Vium-Chr2175 49491 50301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2175g00004 3 216 Calmodulin-binding Proteins AT3G12580 50.455 3.51e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2175g00004 K03283 - vum:124829381 423.705