Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2175g00001 ATGGCAAAACAAAACAAGGAATGGGTTGTGGGAATCGACCTTGGCACAACATATTCGTGTGTTGCTGTATGGCTAGAAGAACACTGTCGAGTGGAGATCATTCACAATGACCAGGGCAATAGAACTACGCCTTCTTGTGTGGCTTTCACAGAGAATCAAAGATTGATTGGTGATGCTGCTAAGAATCAGGCTGCCATGAACCCAACCAACACTCTCTTTGATGTGAAAAGGTTAATCGGCAGAAGATATAGTGATCCCATTATTCAGGACGATCTAAAGTTGTGGCCATTTAAGGTCATTGCTGATTCTGATGAAAAACCCATGATGGTTGTTTCATACAAGGGTCAGGAGAAACAAATCTCAGCTGAAGAAATCTCATCTATGGTCCTTACAAAGATGCGGGAGATTGCAGAAGCGTACTTGGAATCAGAGGTTAAGAATGTTGTGGTTACCGTGCCTGCTTATTTTAATGATTCTCAACGACAAGCAACGAAAGATGCTGGTACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAGCCCACGGCTGCTGCTCTGGCATATGGCCTCGACAAGAGAGCTAATTGCGTCGGAGAGCGGAATATTTTCATTTTTGATCTTGGTGGTGGAACATTTGATGTGTCTCTGCTAACAATCAAAGGTGATGTCTTTGAAGTGAAGGCCACTGCTGGTGACACACACCTTGGAGGAGAGGACATGGATAACAGAATGGTGAAGTACTTTGTCATTGCTGATTCTGATGAAAAACCCATGATGGTTGTTTCATACAAGGGTCAGGAGAAACAAATCTCAGCTGAAGAAATCTCATCTATGGTCCTTACAAAGATGCGGGAGATTGCAGAAGCGTACTTGGAATCAGAGGTTAAGAATGTTGTGGTTACCGTGCCTGCTTATTTTAATGATTCTCAACGACAAGCAACGAAAGATGCTGGTACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAGCCCACGGCTGCTGCTCTGGCATATGGCCTCGACAAGAGAGCTAATTGCGTCGGAGAGCGGAATATTTTCATTTTTGATCTTGGTGGTGGAACATTTGATGTGTCTCTGCTAACAATCAAAGGTGATGTCTTTGAAGTGAAGGCCACTGCTGGTGACACACACCTTGGAGGAGAGGACATGGATAACAGAATGGTGAAGTACTTTGTTGAGGAGTGTCTTGTTGATTCTAAGATGGACAAGAGTGATGTAGACGATGTTGTACTGGTTGGTGGTTCTTCTAGGATTCCCAAAGTACAGCAGCTATTGCAAGACTACTTCAAGGGGAAAGAACTGTGCACGAGCATCAACCCTGACGAGGCTGTTGCCTATGGAGCAGCAGTTCAGGCTGCTTTGCTGACTGAAGGCAACAAATTTGTCCCCAACTTAGTGCTATTAGATGTTACGCCGCTGTCACTCGGTATATGTCTAGAAGGAGATCTCATGAGTGTCCTGATTCCTAGGAACACCACCATTCCTGTTGTAAAAAAGGAAGAATATAAAACAGTCAAAGATTTCCAATCTGCTATCTGTATTGAGGTTCACGAGGGTGAAAGGACAAGAGCAAGCGATAACAATTTGCTTGGTTTCTTTAATCTTAATGGCAATCCTAATGCTCTTCGAGGCCATCCTGTAACCGTATGTTTCAGTATAGATGCTGATGGTATCCTAACTGTAATTGCTGAGGATGAAACCATTGGAAGTAGGAATTGGATTACCGTAACCAACGAAAACGGAAAACTATCAACTCAACAAATTATGAGAATGATTCAAGAAGGCGAGAAATACAAGGCTGAAGACCAGAAGTACGAAAAGAAAGTTAAAGCAATTAATGCTTTGGATGACTTCGTTTACAAGATAAGGAATGCTATAGATGATGTAGATAATCCACAAGAGAAAACGAAGATCAACAAGGCAATTGCAGAGACCGAGAAATTGCTTGATGCTAGGGAGCAGACAGAAACAGAGGTTTTTGTGGATCATCTGCACAGGGTGAAGAGCCTCATTGAACCCATTATGAAAGATTAA 2061 0.4284 MAKQNKEWVVGIDLGTTYSCVAVWLEEHCRVEIIHNDQGNRTTPSCVAFTENQRLIGDAAKNQAAMNPTNTLFDVKRLIGRRYSDPIIQDDLKLWPFKVIADSDEKPMMVVSYKGQEKQISAEEISSMVLTKMREIAEAYLESEVKNVVVTVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAALAYGLDKRANCVGERNIFIFDLGGGTFDVSLLTIKGDVFEVKATAGDTHLGGEDMDNRMVKYFVIADSDEKPMMVVSYKGQEKQISAEEISSMVLTKMREIAEAYLESEVKNVVVTVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAALAYGLDKRANCVGERNIFIFDLGGGTFDVSLLTIKGDVFEVKATAGDTHLGGEDMDNRMVKYFVEECLVDSKMDKSDVDDVVLVGGSSRIPKVQQLLQDYFKGKELCTSINPDEAVAYGAAVQAALLTEGNKFVPNLVLLDVTPLSLGICLEGDLMSVLIPRNTTIPVVKKEEYKTVKDFQSAICIEVHEGERTRASDNNLLGFFNLNGNPNALRGHPVTVCFSIDADGILTVIAEDETIGSRNWITVTNENGKLSTQQIMRMIQEGEKYKAEDQKYEKKVKAINALDDFVYKIRNAIDDVDNPQEKTKINKAIAETEKLLDAREQTETEVFVDHLHRVKSLIEPIMKD 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2175g00001 686 Gene3D - 346 447 - -
Vium2175g00001 686 SUPERFAMILY Actin-like ATPase domain 200 250 IPR043129 -
Vium2175g00001 686 FunFam Heat shock protein 70 10 201 - -
Vium2175g00001 686 Pfam Hsp70 protein 401 685 IPR013126 GO:0005524|GO:0140662
Vium2175g00001 686 Pfam Hsp70 protein 9 250 IPR013126 GO:0005524|GO:0140662
Vium2175g00001 686 Gene3D - 221 473 - -
Vium2175g00001 686 PANTHER HEAT SHOCK PROTEIN 70KDA 9 250 IPR013126 GO:0005524|GO:0140662
Vium2175g00001 686 SUPERFAMILY Actin-like ATPase domain 270 463 IPR043129 -
Vium2175g00001 686 ProSitePatterns Heat shock hsp70 proteins family signature 3. 418 432 IPR018181 -
Vium2175g00001 686 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vium2175g00001 686 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vium2175g00001 686 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 474 620 IPR029047 -
Vium2175g00001 686 FunFam Heat shock 70 kDa protein 350 444 - -
Vium2175g00001 686 Pfam MreB/Mbl protein 279 400 - -
Vium2175g00001 686 PRINTS 70kDa heat shock protein signature 60 68 - -
Vium2175g00001 686 PRINTS 70kDa heat shock protein signature 148 168 - -
Vium2175g00001 686 PRINTS 70kDa heat shock protein signature 8 21 - -
Vium2175g00001 686 PRINTS 70kDa heat shock protein signature 211 221 - -
Vium2175g00001 686 PRINTS 70kDa heat shock protein signature 38 50 - -
Vium2175g00001 686 Gene3D - 1 203 - -
Vium2175g00001 686 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vium2175g00001 686 Coils Coil 647 667 - -
Vium2175g00001 686 FunFam heat shock 70 kDa protein-like 73 128 - -
Vium2175g00001 686 Gene3D - 621 686 IPR029048 -
Vium2175g00001 686 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 620 684 IPR029048 -
Vium2175g00001 686 ProSitePatterns Heat shock hsp70 proteins family signature 2. 356 369 IPR018181 -
Vium2175g00001 686 FunFam Molecular chaperone DnaK 216 349 - -
Vium2175g00001 686 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 472 625 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2175g00001 Vium-Chr2175 20551 32136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2175g00001 401 684 Calmodulin-binding Proteins AT3G12580 57.388 9.40e-102 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2175g00001 K03283 - vum:124829379 1316.98