Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2173g00001 ATGGCTACAGCTACATCCAATGGTTTGGTGTCACAAAACCATGTAGGAGGAGTGAATCCAAGTCCAGCAAAAAAAACTGATGAGAAGAAAACACAAAAAGTTACCGAAGATGATGCAAACATAAACTACAGGGAAAGAGCGCAGTGGCTTCGTCCAGCAGTTTTAGGAGCCAATGATGGGTTGGTTTCGGTTGCTTCATTGATGATGGGTGTAGGAGCCGTTAAAAAAGACCCAAAGGCTATGCTACTTGCTGGTTTTGCAGGGTTGGTTTCAGGGGCTTGTGGTATGGCGATAGGAGAGTACGTTGCAGTGTACACTCAGTATGATGTTGAGATTGGTCAAATAAAGAGAGATATGAAGATGAGTGTAGGAGGGGAAAAGGACTTGGAGATGGAAATGGAGAAAAGAACATTACCTAATCCACTGCAAGCTACTTTGGCATCTGCAGTATCCTTTTCTATAGGTGCATTGATTCCTCTACTTTCTGCCGCTTTTATAGAACGTTACATGACAAGGGTTATTGTGGTTGTGGCAACGACTAGCTTGGCTTTGCTGGTGTTTGGAAGGGTGGTGGCTCAACTGGGAAAAACTCCTAAGTTAAAATCTCATGTAAGGTTCCTTCTTGGAGGATGGATAGCCATGGCCATCACTTTTGGGTTAAGTAAATTACTGGGTACTAGTGCTTTAATGTAG 693 0.4329 MATATSNGLVSQNHVGGVNPSPAKKTDEKKTQKVTEDDANINYRERAQWLRPAVLGANDGLVSVASLMMGVGAVKKDPKAMLLAGFAGLVSGACGMAIGEYVAVYTQYDVEIGQIKRDMKMSVGGEKDLEMEMEKRTLPNPLQATLASAVSFSIGALIPLLSAAFIERYMTRVIVVVATTSLALLVFGRVVAQLGKTPKLKSHVRFLLGGWIAMAITFGLSKLLGTSALM 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2173g00001 230 CDD Nodulin-21 48 199 - -
Vium2173g00001 230 MobiDBLite consensus disorder prediction 1 37 - -
Vium2173g00001 230 Pfam VIT family 130 220 IPR008217 GO:0005384|GO:0030026
Vium2173g00001 230 Pfam VIT family 50 117 IPR008217 GO:0005384|GO:0030026
Vium2173g00001 230 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 27 224 IPR008217 GO:0005384|GO:0030026
Vium2173g00001 230 MobiDBLite consensus disorder prediction 23 37 - -
Vium2173g00001 230 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2173g00001 Vium-Chr2173 10058 10887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2173g00001 27 229 Nodulin-like Gene Family AT3G43660 56.650 2.00e-77 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2173g00001 K22736 - gmx:547974 319.316