Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2170g00002 ATGGGGCGTATGCACAGTCGCGGTAAGGGTATCTCCAGTTCGGCTCTTCCATATAAGAGGACGCCACCTAGCTGGTTGAAGATTTCGTCGCAGGATGTGGAGGAAAACATCTGCAAGTTTGCCAAGAAAGGTCTCACTCCATCCCAAATTGGTGTTATTCTTCGTGACTCTCATGGAATTGCTCAGGTTAAGAGTGTCACTGGAAGCAAGATTCTACGTATATTGAAAGCCCATGGTCTTGCTCCTGAAATTCCTGAGGATTTGTATCACTTGATCAAAAAGGCTGTCTCCATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACTAAGAAGCTCCCACCCGTGTGGAAATATGAATCTACAACTGCCAGCACCCTTGTGGCTTAG 456 0.4583 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2170g00002 151 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vium2170g00002 151 Pfam Ribosomal protein S15 74 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vium2170g00002 151 Gene3D - 83 151 - -
Vium2170g00002 151 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Vium2170g00002 151 Gene3D - 35 82 - -
Vium2170g00002 151 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 151 IPR023029 -
Vium2170g00002 151 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vium2170g00002 151 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vium2170g00002 151 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vium2170g00002 151 FunFam 40S ribosomal protein S13 35 82 - -
Vium2170g00002 151 FunFam 40S ribosomal protein S13 83 151 - -
Vium2170g00002 151 CDD Ribosomal_S15p_S13e 70 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vium2170g00002 151 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2170g00002 Vium-Chr2170 22296 24416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2170g00002 1 151 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 94.040 2.30e-103 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2170g00002 K02953 - qsa:O6P43_029937 300.441